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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A52 F1 I1 R1	19	66.0	4263516	97.2%	4144137	76.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	REL606	2,031,850	Δ22,863 bp		[manB]–wcaJ	22 genes [manB], manC, insB‑14, insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	2031850–2031888	2054712	22825–22863	55 [0]	[1] 56	[manB]–wcaJ	[manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,wcaJ

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2031849	0 (0.000)	55 (0.830)	41/148	0.6	99.1%	coding (949/1365 nt)	manB	Phosphomannomutase
*	?	REL606	2054713 =	1 (0.020)	55 (0.830)	41/148	0.6	99.1%	intergenic (‑42/+13)	wcaJ/cpsG	predicted UDP‑glucose lipid carrier transferase/phosphomannomutase

GATK/CNVnator alignment

N/A