Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A133 F1 I1 R1
|
21 |
238.6 |
15028552 |
95.5% |
14352267 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,915 |
(CCAG)7→6 |
coding (182‑185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103892 = | 1 (0.000) | 128 (0.870) |
53/96 |
1.3 |
99.8% |
coding (159/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103887 |
0 (0.000) | coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
Only 100 of 276 total aligned reads displayed.
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACC > 1:95557/1‑76
GTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCT < 1:508898/76‑1
TTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTG > 2:6103854/1‑76
TTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTG > 2:366283/1‑76
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG < 2:6771478/76‑1
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG < 1:2315456/76‑1
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG < 1:2198331/76‑1
TTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGC > 2:876244/1‑76
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCT > 1:525166/1‑76
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC < 2:5429696/76‑1
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC > 2:7036295/1‑76
TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT > 2:3483933/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 2:3280130/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 1:1178382/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 1:2683592/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:514757/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG < 1:6895269/76‑1
TAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGC > 2:2636350/1‑76
TAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGC < 2:6230008/76‑1
AGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCT < 1:2962230/76‑1
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG > 1:5744177/1‑76
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG > 2:5215854/1‑76
GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 1:1764926/1‑76
TTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCT > 2:1582639/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG > 2:4385718/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG > 1:6498257/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 2:3209077/76‑1
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 2:5849503/76‑1
CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT < 2:5456010/76‑1
TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑G < 1:4006671/76‑1
TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑G < 1:542292/76‑1
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGC > 1:629915/1‑76
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGt > 2:3813765/1‑75
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGgt > 2:1662841/1‑74
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCT < 1:1452245/76‑1
ATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTG > 2:7452042/1‑76
TAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGT < 2:4853592/76‑1
TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAA < 2:4511895/76‑1
ATAATAAGTGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAA < 1:3653671/76‑1
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAA < 2:6318173/76‑1
ATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGGTGTGGAAaat > 2:2547198/1‑73
ATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGGTGTGGAATCT > 1:5002113/1‑76
ATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCT < 1:4571724/76‑1
TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTA < 1:7022004/76‑1
TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTA < 2:1126316/76‑1
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGGAATCTAA > 1:6084362/1‑76
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAA < 2:2865591/76‑1
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGGAATCTAAT > 2:7303293/1‑76
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT < 1:6699343/76‑1
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT < 1:4368092/76‑1
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT < 2:647198/76‑1
GGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GC < 2:6862449/76‑1
AATTATTTCGTAGTATAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAA < 2:4340897/76‑1
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAA < 1:3200986/76‑1
TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATT < 2:6383293/76‑1
TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGCTGTGGAATCTAAA‑TCAAATTT > 1:5049916/1‑76
TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGGCGGGGAAACTTAAT‑GCAAATT > 1:5640728/1‑76
TATTTCGTAGTACAAAATCCACATTCACACCTGGCTAGCTGGCTGGCTGGCT‑GGCTGTGGAAACTAAT‑GCAAATTT > 1:2123428/1‑76
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGGTTTGGAATCTTATGGCAAATTT > 1:7363900/1‑76
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCAC < 1:7073073/76‑1
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTa < 2:6673778/76‑2
GTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAAACTAAT‑GCCAAATTTACCCCCTT > 1:2452563/1‑76
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTA < 2:3659062/76‑1
CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATA < 2:4792537/76‑1
AATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTC < 2:5548261/76‑1
ATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCG < 1:3052412/76‑1
ATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCG < 2:2321724/76‑1
CCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAA < 2:1863341/76‑1
CCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAA < 1:6760407/76‑1
CCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAA < 1:6223599/76‑1
CACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAG < 1:4316772/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTC < 2:3915008/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTC < 1:283101/76‑1
TCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAAT < 1:3007607/76‑1
CACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATA < 2:5007596/76‑1
ACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTTGAAGTCAATAACG > 1:5861900/1‑76
ACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACG < 2:5359515/76‑1
ACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAAACTAAA‑GCAAATTTTACCCCCTTATATTCGAAGTCAATAAag > 1:3876761/1‑74
GGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGC < 1:1577812/76‑1
GGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAAAGAAGCAGgt > 1:5979233/1‑74
CTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT < 1:5929194/76‑1
TGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC < 2:154333/76‑1
TGGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC > 1:1376824/1‑76
GGCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCA > 1:201620/1‑76
GCTGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCAT < 1:6424419/76‑1
TGGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTG > 1:5877395/1‑76
GGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 1:1052277/76‑1
GGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 2:3981965/76‑1
GGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 1:3501953/76‑1
GGCTGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 1:2637556/1‑76
TGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA > 1:4870071/1‑76
TGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 1:1000896/76‑1
TGGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATCCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:123921/76‑1
GGCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < 1:51827/76‑1
GCT‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGC < 2:2035096/76‑1
T‑GGCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCA > 2:3353269/1‑76
GCTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATG < 1:71471/76‑1
CTGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT < 1:3899804/76‑1
TGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT > 2:2495651/1‑76
TGTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT > 1:7498950/1‑76
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgTGAAATCTAAT‑GCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
