Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A25 F1 I1 R1
|
14 |
46.3 |
3075166 |
96.7% |
2973685 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,915 |
(CCAG)7→6 |
coding (182‑185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103892 = | 2 (0.040) | 35 (1.130) |
30/96 |
0.1 |
95.5% |
coding (159/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103887 |
2 (0.060) | coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
TGTTTTCTTTTTTANTGTTGCCTTTTATAGTATANTAAGGCCANTTATTTCGTAGTACAAAATCCACATTCACACC < 2:1269298/76‑1
TTTTCTTTTTTAGTGTTGCCTTGTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTG < 2:54146/76‑1
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCT > 2:1035008/1‑76
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC > 1:1217964/1‑76
TTTTAGTGATGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACGTGGCTGGCT > 1:45687/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 2:1409558/1‑76
TTAGTGTTGCCTTTTATAGTATAATGAGGGCGATTATTTCNNAGTACAAAATNNATATTCACACCTGGCTGGCTGG > 1:1379896/1‑76
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG > 2:173884/1‑76
TGTTGCCTNTTATAGTATANTAAGGGCAATTATTTCGTAGTANAAAATCCACATTCACACCTGGCTGGCTGGCTGG < 2:1286970/76‑1
GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 1:707390/1‑76
TTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCT > 1:386912/1‑76
TGCCTTTTATAGTATAATAAGTGGAATTATTTCGTAGTACAAAATCCACATTCACGCCTGGCTGGCTGGCTGGCTG < 2:113738/76‑1
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 2:809714/76‑1
TGCCTTTTATAGTATAATAAGGGCAATAATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG > 1:1517085/1‑76
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGC > 1:896496/1‑76
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGC > 1:896494/1‑76
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT < 2:1316601/76‑1
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT > 1:1220681/1‑76
TAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGT < 1:1039635/76‑1
AGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTG < 2:1366045/76‑1
TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAA > 1:757642/1‑76
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG < 2:473489/67‑1
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG > 1:473489/1‑67
TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTA < 1:1323459/76‑1
AAGTGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAA < 2:405644/76‑1
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAA > 2:1247504/1‑76
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGGAAATCTAA < 2:1307811/76‑1
AAGGGCAATTATTNCGTAGTACAAAATCNACNATCACACCTGGCTGGCGGGCTGGCTGGCTGGCTGTGAAATCTAA < 2:1383739/76‑1
GGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATG < 1:497575/76‑1
GCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCA > 2:955877/1‑76
CAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAA > 2:719767/1‑76
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAA > 2:81699/1‑76
ATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAAT > 2:1235939/1‑76
TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATT > 2:329756/1‑76
TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTT > 2:66969/1‑76
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCAC < 2:548045/76‑1
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCAC > 1:1035759/1‑76
GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCC > 2:90861/1‑76
GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATATAATGCAAATTTCACCCC > 1:694161/1‑76
TAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCT > 1:472259/1‑76
TAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCT > 2:723003/1‑76
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTT < 2:1214559/76‑1
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTATGAAATCTAATGCAAATTTCACCCCTT > 1:461741/1‑76
ACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGCGAAATCTAATGCAAATTTCACCCCTTTAT > 2:1117048/1‑76
AAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATAT > 2:1166474/1‑76
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATT < 2:137662/76‑1
ATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAACTCTAATGCAAATTTCACCCCTTTATATTCG < 1:1392083/76‑1
ATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCG < 2:396358/76‑1
TCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGA < 1:233674/76‑1
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAG < 1:119890/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTC < 2:3882/76‑1
ATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA < 1:236300/76‑1
TCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAAT > 2:844627/1‑76
CACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATA < 2:63325/76‑1
CCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGA < 2:757642/76‑1
CTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAA < 2:837327/76‑1
CTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAA > 1:416276/1‑76
CTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAANCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAANGAA > 2:1424650/1‑76
TGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG > 1:511534/1‑76
TGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG > 2:929040/1‑76
GGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTAGAAGTCAATAACGAAGC > 1:174489/1‑76
CTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT < 2:633286/76‑1
TGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC > 2:914859/1‑76
GGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCA < 1:292405/76‑1
TGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTG > 2:475168/1‑76
TGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTG > 2:343699/1‑76
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 1:246988/1‑76
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT < 1:1269038/76‑1
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:977415/76‑1
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:303447/76‑1
GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < 1:1116721/76‑1
CTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCC > 2:929641/1‑76
TGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCA > 2:969760/1‑76
TGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT > 2:374719/1‑76
GTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < 1:675708/76‑1
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
