Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A107 F1 I1 R1
|
19 |
326.9 |
20855348 |
93.1% |
19416328 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,915 |
(CCAG)7→6 |
coding (182‑185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103892 = | 12 (0.040) | 112 (0.560) |
56/96 |
2.0 |
94.7% |
coding (159/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103887 |
5 (0.020) | coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
Only 100 of 290 total aligned reads displayed.
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACC > 2:6335129/1‑76
TTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAGTCCACATTCACACCTG < 1:4359594/76‑1
TTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTG > 1:9910139/1‑76
TTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTG < 1:5721020/76‑1
CTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCATATTCACACCTGGCTG > 1:9138316/1‑76
CTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTG < 2:1594161/76‑1
TTTTTAGTGTGGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC < 2:4250421/76‑1
TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT > 2:7576116/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG < 2:8419410/76‑1
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 2:4483015/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:1420790/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG < 1:2524267/76‑1
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 2:9891947/76‑1
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 2:8867171/76‑1
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 2:8371691/76‑1
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG < 1:896848/76‑1
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG < 1:401736/76‑1
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG > 1:9303269/1‑76
GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 2:6922868/1‑76
TTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCT > 2:2704613/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 2:2654321/76‑1
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG > 1:8361027/1‑76
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG > 2:6789808/1‑76
GCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGG < 2:4000406/76‑1
CCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGC > 2:6892530/1‑76
CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGgc > 1:1248809/1‑74
TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCcg > 2:9620385/1‑74
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGGTGGGT‑GGg > 1:583683/1‑75
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGg > 1:4536079/1‑75
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTagg > 1:5467046/1‑73
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGC < 2:378992/76‑1
TTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGC < 1:2572116/76‑1
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGgt > 2:1924965/1‑74
ATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGCgg > 2:7373307/1‑74
AGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGGTGTG > 1:3491591/1‑76
GTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGA < 1:3310725/76‑1
TATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAA < 1:8105721/76‑1
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGGTGTGGAA > 1:5262405/1‑76
ATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAA < 1:1857994/76‑1
TAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGGGAAATATA > 1:7393666/1‑76
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAA < 1:2889217/76‑1
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAAT < 2:10382288/76‑1
GGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATG < 1:5655520/76‑1
GCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCA < 1:1077384/76‑1
ATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAAT < 1:8263394/76‑1
TATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAAACTAATGCAAATTT > 2:2389703/1‑76
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGGCGGGGAAATTTAATGCAAATTT > 1:1375741/1‑76
TTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCA < 2:7291924/76‑1
TTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCA < 1:200521/76‑1
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGGAAACTAATGCAAATTTTAC > 1:9675190/1‑76
TTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCAC < 2:8523100/76‑1
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCCGTGGAAACTAATGTAAAATTTACCC > 2:7175805/1‑76
GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAAATTCACCCC > 2:5024507/1‑76
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCACTT < 1:4791907/76‑1
GTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 2:9347095/76‑1
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTA < 1:9387040/76‑1
ACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTAT < 2:6437013/76‑1
CAAAATCCACATTCCCACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 1:1608767/76‑1
CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 2:3139472/76‑1
CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 2:8193436/76‑1
AAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGGAAACTTATGCCAAATTCACCCCCTTTTAT > 2:6229370/1‑76
AAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATAT < 1:6193034/76‑1
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATT < 1:3760269/76‑1
ATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCG < 2:8674530/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGGT‑GGCTGGGAAATCTTATGCCAAATTCACCCCCTTTTATTCGAAGTC > 1:10183844/1‑76
ATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA < 2:5976300/76‑1
TCACACCTGGCTGGCTGGCTGGCTGGCT‑GGGTGTGAAATCTTATGCAAATTTTACCCCCTTTTTTTTGAAGTCAAa > 1:8554537/1‑75
CACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATA < 1:3861889/76‑1
ACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAA < 2:4343912/76‑1
ACCTGGCTGGCTGGCTGGCTGGCT‑GGGTGGGGAAACTAATGCAAAATTTACCCCTTTATATTTGAAGTCAATAACG > 2:9272344/1‑76
ACCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACG < 1:7781973/76‑1
CCTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGA < 2:7951277/76‑1
CTGGCTGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAA < 2:8441209/76‑1
GGCTGGCTGGCTGGCTGGCT‑GGCTTTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGC < 1:7636141/76‑1
TGGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGT > 1:5144976/1‑76
GGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTT < 2:3482370/76‑1
GGCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTT < 1:5942383/76‑1
GCTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTT < 1:6527621/76‑1
CTGGCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTT > 2:4949661/1‑76
GCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCAT < 1:8749367/76‑1
GCTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCAT < 2:5467046/76‑1
CTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT < 1:2207659/76‑1
CTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT > 1:6664473/1‑76
CTGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT > 2:9484181/1‑76
TGGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGGTTTCATTG > 2:4648669/1‑76
GGCTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 1:7172604/1‑76
CTGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAT < 2:2950432/76‑1
TGGCT‑GGCTGTTAAATCTAATGCAAATTTCGCCCCTTTATATTCGAAGTAAATAACGAAGCAGTTTTCATTGTATA < 1:236402/76‑1
TGGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:10090434/76‑1
GGCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG > 1:6968053/1‑76
GGCT‑GGCTGTGAAATCTAATGCAAATGTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < 1:4446416/76‑1
GCT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGC > 1:3003437/1‑76
CT‑GGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCC > 1:3032600/1‑76
GCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATG < 1:10052727/76‑1
CTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT > 2:8116983/1‑76
CTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT > 2:6515078/1‑76
CTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT > 2:3341046/1‑76
TGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < 2:5159067/76‑1
TGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < 2:3702554/76‑1
TGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < 1:6159932/76‑1
TGTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT‑GGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103993‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggct‑ggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTTT < REL606/2103887‑2103813
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
