Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A58 F1 I1 R1
|
18 |
55.3 |
3756050 |
96.8% |
3635856 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
2,103,915 |
(CCAG)7→6 |
coding (182‑185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
2103888 |
2103891 |
4 |
61 [0] |
[0] 61 |
ECB_01992 |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103892 = | 0 (0.000) | 37 (0.990) |
30/96 |
0.2 |
100% |
coding (159/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103887 |
0 (0.000) | coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
GATK/CNVnator alignment
N/A
