Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A46 F1 I1 R1
|
17 |
71.0 |
4433184 |
98.0% |
4344520 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,103,915 |
(CCAG)7→6 |
coding (182‑185/216 nt) |
ECB_01992 → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2103892 = | 2 (0.030) | 58 (1.280) |
46/96 |
0.0 |
97.3% |
coding (159/216 nt) |
ECB_01992 |
hypothetical protein |
| ? | REL606 |
= 2103887 |
2 (0.040) | coding (154/216 nt) |
ECB_01992 |
hypothetical protein |
Only 100 of 129 total aligned reads displayed.
GTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103992‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < REL606/2103887‑2103814
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG > 1:302612/1‑76
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG < 1:1782323/76‑1
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG < 1:1782299/76‑1
TTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGG > 1:1583910/1‑76
TTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGC > 1:304010/1‑76
TTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGC > 2:888256/1‑76
TTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGC > 1:2195794/1‑76
TCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCT > 1:1241008/1‑76
CTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTG > 1:1625655/1‑76
TTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGC > 2:2000404/1‑76
TTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCT > 1:1555853/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 1:1002391/1‑76
TTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTG > 2:2091494/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG < 2:1625655/76‑1
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:748739/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:1484416/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:6005/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 1:1943353/1‑76
TTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGG > 2:1545066/1‑76
AGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCT > 1:192552/1‑76
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 1:1928289/76‑1
GTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTG < 1:128123/76‑1
TGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGG > 1:1369109/1‑76
GTTGCCTTTTATAGTATAATAANGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 2:289729/1‑76
GTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGC > 2:1655871/1‑76
TTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCT < 2:417464/76‑1
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG > 1:1309821/1‑76
TGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTG < 1:1019818/76‑1
CTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCT > 2:780299/1‑76
TTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTG < 2:1606329/76‑1
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT > 1:1330956/1‑76
TATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCT < 1:1074999/76‑1
TAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGT > 2:130359/1‑76
AGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTG < 2:1677711/76‑1
AGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTG > 1:305290/1‑76
TAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACCCCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAAT < 1:690065/76‑1
TAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAAT < 1:690040/76‑1
AATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATC > 2:1404470/1‑76
AAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAA < 2:1212872/76‑1
AGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAAT < 2:1537443/76‑1
GGCAATTATTTCGTGGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGC < 2:1789056/76‑1
GGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGC > 2:1178069/1‑76
GCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCA < 1:1616323/76‑1
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAA > 2:1292205/1‑76
AATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGGGAAATCTAATGCAAA > 2:1292186/1‑76
ATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAAT < 2:1629395/76‑1
TTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATT > 1:922444/1‑76
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTC < 2:409289/76‑1
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTC > 1:1692589/1‑76
ATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTC > 2:1650867/1‑76
CGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCC < 1:212213/76‑1
GTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCC > 1:2111288/1‑76
AGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTT < 1:1123341/76‑1
GTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT < 1:1697345/76‑1
GTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT > 1:533511/1‑76
GTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTT > 2:1965543/1‑76
TACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTA > 1:1083312/1‑76
ACAAAATCCACATTCACCCCTGGCTGGCGGGCTGGCTGGCTGGCTGTGAAATCTAAGGCAAATTTCCCCCCTTTAT < 2:1319677/76‑1
CAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATA < 1:1792439/76‑1
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATT > 1:445170/1‑76
AAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATT < 2:1057163/76‑1
AATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTC < 2:927407/76‑1
AATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTC < 1:217389/76‑1
AATCCACATTCAAACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTC > 2:277137/1‑76
CCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAA > 1:890868/1‑76
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAG < 2:652896/76‑1
CACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAG < 1:776586/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTC < 1:1263536/76‑1
CATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTC < 2:1649136/76‑1
ATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA > 2:2064710/1‑76
ATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCA < 1:2212638/76‑1
TCACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAAT > 2:1142716/1‑76
ACACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAA < 2:194596/76‑1
CACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAAC > 2:393891/1‑76
ACCTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACG > 2:109679/1‑76
CTGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAA < 1:127312/76‑1
TGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG < 2:1002260/76‑1
TGGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAG < 1:2058427/76‑1
GGCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTAAATAACGAAGC > 2:640069/1‑76
GCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCA < 1:954838/76‑1
GCTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCA < 1:1969448/76‑1
CTGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAG < 2:1576333/76‑1
TGGCTGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGT > 2:810174/1‑76
TGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC < 1:311619/76‑1
TGGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTC > 2:89168/1‑76
GGCTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCA < 1:1098076/76‑1
CTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT > 1:1683419/1‑76
CTGGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATT > 2:126028/1‑76
GGCTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGT > 2:137769/1‑76
CTGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTAT > 2:1870150/1‑76
TGGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATA < 2:702419/76‑1
GGCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAG < 1:634288/76‑1
GCTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGC < 1:1705908/76‑1
CTGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCC > 1:1016504/1‑76
TGGCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCA > 2:1692632/1‑76
GCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATG < 2:1553742/76‑1
GCTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATG > 1:100731/1‑76
CTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT > 1:1422464/1‑76
CTGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGT > 1:1422468/1‑76
TGTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < 1:397263/76‑1
GTTTTCTTTTTTAGTGTTGCCTTTTATAGTATAATAAGGGCAATTATTTCGTAGTACAAAATCCACATTCACACCTGGCTGGCTGGCTGGCTGGCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2103992‑2103892
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctggctggctggctggctggctgTGAAATCTAATGCAAATTTCACCCCTTTATATTCGAAGTCAATAACGAAGCAGTTTTCATTGTATAGCCATGTT < REL606/2103887‑2103814
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
