Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A48 F1 I1 R1
|
19 |
65.6 |
4133022 |
97.0% |
4009031 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,163,890 |
Δ9 bp |
coding (3035‑3043/4029 nt) |
rpoB → |
DNA‑directed RNA polymerase subunit beta |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4163889 | 1 (0.020) | 57 (0.970) |
45/136 |
0.2 |
98.4% |
coding (3034/4029 nt) |
rpoB |
DNA‑directed RNA polymerase subunit beta |
| ? | REL606 |
4163899 = |
1 (0.020) | coding (3044/4029 nt) |
rpoB |
DNA‑directed RNA polymerase subunit beta |
GAAGCTGAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4163808‑4163889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCG > REL606/4163899‑4163973
GAAGCTGAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATC < 1:106683/76‑1
TGAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTG > 2:117121/1‑76
TGAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTG > 1:730363/1‑76
GAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGG < 1:1114924/76‑1
GAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCT < 2:877604/76‑1
GAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCT < 2:678342/76‑1
GAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCT > 2:257920/1‑76
AAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTG < 2:542241/76‑1
CTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGC < 2:1866441/76‑1
ACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTA > 2:708697/1‑76
ACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTA > 2:1797913/1‑76
CAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTAT > 1:1247271/1‑76
CAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTAT > 2:1270860/1‑76
AAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATG < 2:2053177/76‑1
ACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGAC < 1:264622/76‑1
GCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTG < 1:418224/76‑1
GCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTG > 2:1552859/1‑76
GCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAA > 2:1312063/1‑76
CGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAA > 1:1202184/1‑76
CGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAA < 1:669237/76‑1
CGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACG < 1:942641/76‑1
GCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGA > 1:1132176/1‑76
CTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAG < 2:1807536/76‑1
CTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAG > 2:623544/1‑76
GGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTT > 1:98867/1‑76
CTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCG < 2:450257/76‑1
CTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCG < 2:1544188/76‑1
CTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCG > 1:1530732/1‑76
TGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGA > 1:1534396/1‑76
TGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGA > 1:198418/1‑76
GGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAG > 1:744699/1‑76
GAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGA < 2:885222/76‑1
TGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAA > 1:1233105/1‑76
TGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAA > 2:1894167/1‑76
GGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAA < 1:780953/76‑1
CCTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTC > 1:1857983/1‑76
CTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCG < 2:802476/76‑1
CTGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCG > 1:2047062/1‑76
TGACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGA > 2:383868/1‑76
ACCGACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAG > 2:1239056/1‑76
GACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGA < 1:883758/76‑1
GACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGA > 2:572251/1‑76
ACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAn < 1:563113/76‑2
ACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAA > 1:1250999/1‑76
ACGAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAA < 2:1692537/76‑1
GAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAC < 1:836072/76‑1
GAAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAAC > 1:147732/1‑76
AAGAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACG > 2:1967597/1‑76
GAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCC < 2:578069/76‑1
GAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCC < 2:415802/76‑1
GAGAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACACGAAGCGAAGCGCC < 2:1526683/76‑1
GAAACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGC > 1:872556/1‑76
AACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAA > 2:283612/1‑76
ACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAA > 1:810703/1‑76
ACAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAA > 1:461657/1‑76
CAAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAA < 2:1249276/76‑1
AAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAAT < 2:1351121/76‑1
AAAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAAT < 2:211855/76‑1
AAATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATC > 2:1579710/1‑76
ATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCAC > 1:456341/1‑76
ATCAGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCAC > 2:1194608/1‑76
AGCTGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCA < 1:2030199/76‑1
GGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGC > 1:568192/1‑76
GCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCG > 2:1432480/1‑76
GCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCG > 1:1308388/1‑76
GAAGCTGAGAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4163808‑4163889
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctggCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCG > REL606/4163899‑4163973
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
