mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC | 547,700 | Δ42,623 bp | between IS1 | [nmpC]–[insK‑1] | 44 genes [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, ECB_00513, ECB_00514, ECB_00515, ECB_00516, ECB_00517, appY, ompT, envY, ybcH, nfrA, nfrB, nfrB, ECB_00524, yhhI, ECB_00526, ECB_00527, ECB_00528, ECB_00529, ECB_00530, cusS, cusR, cusC, ylcC, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, insJ‑1, insK‑1, insB‑7, insA‑7, [insK‑1] |
| RA | 649,601 | T→C | I401V (ATC→GTC) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 1,266,142 | C→T | Y327Y (TAC→TAT) | prfA → | peptide chain release factor 1 |
| RA | 1,304,883 | A→G | Y453H (TAT→CAT) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| JC | 1,881,180 | Δ10 bp | coding (554‑563/972 nt) | manX → | fused mannose‑specific PTS enzymes: IIA component/IIB component |
| RA | 1,886,748 | T→A | intergenic (‑578/+91) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,701,213 | T→G | L151R (CTG→CGG) | proW → | glycine betaine transporter subunit |
| RA | 3,498,013 | G→A | S8L (TCA→TTA) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,998 | Δ6,935 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,959,951 | C→T | A44A (GCC→GCT) | uvrD → | DNA‑dependent ATPase I and helicase II |
| RA | 4,162,470 | A→C | T539P (ACC→CCC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC | 4,163,890 | Δ9 bp | coding (3035‑3043/4029 nt) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,202,632 | T→C | intergenic (‑73/‑127) | iclR ← / → metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |