Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A69 F1 I1 R1
|
20 |
59.3 |
3764421 |
95.9% |
3610079 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,015,771 |
IS150 (–) +3 bp |
coding (1192‑1194/1677 nt) |
ECB_02816 → |
KpsD protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 49 (0.860) |
41/146 |
0.3 |
95.9% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3015771 = |
2 (0.040) | coding (1192/1677 nt) |
ECB_02816 |
KpsD protein |
| * |
? |
REL606 |
= 3015773 | 2 (0.040) | 82 (1.420) |
51/148 |
0.1 |
97.5% |
coding (1194/1677 nt) |
ECB_02816 |
KpsD protein |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > REL606/3015771‑3015845
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGTGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:1799284/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:1173595/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:702120/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:510292/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:1799299/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:1449488/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1223924/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:26616/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:206805/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:1614964/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1626127/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1041302/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:379535/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGCCCAACAAAATGGGTGCAGTAC < 2:1227049/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1596311/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 2:277195/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:589743/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 2:4368/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:887440/76‑1
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACT > 1:1689743/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTT > 2:974808/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:1653317/1‑76
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTGCACTTTCT < 2:305068/76‑1
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCT > 1:1689711/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTG > 2:1231070/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTG > 2:1846026/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT < 2:1192998/76‑1
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT > 2:1000450/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT > 1:1029036/1‑76
TTTGGTTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCA < 2:1499945/76‑1
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCA < 1:1735487/76‑1
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCA < 1:1735511/76‑1
GCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCA < 2:114162/76‑1
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCAC > 1:73624/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCA > 1:830200/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCA < 1:722223/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGA < 1:1876649/76‑1
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAA < 1:1367405/76‑1
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAA > 1:1424285/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAA > 2:144384/1‑76
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAG > 1:467950/1‑76
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAG > 1:988314/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:1028230/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAG > 1:589225/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGC > 1:1824808/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGC > 1:1470841/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCC < 2:1653317/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCT > 1:1228661/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > 1:1732923/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGC < 2:401252/76‑1
TCCATTTCATCGTCCAACAAAATGGGAGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG > 2:1040184/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGA > 1:1863994/1‑76
TTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:62921/76‑1
ATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGG < 2:9646/76‑1
TCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGA < 2:923914/76‑1
CGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAG > 2:1150405/1‑76
TCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGC > 2:1457014/1‑76
CCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCA > 2:809700/1‑76
AACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACA > 1:859165/1‑76
AACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACA < 1:1574953/76‑1
CAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAAC < 2:1700477/76‑1
AAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTG < 2:340770/76‑1
ATGGGTGCAGTGCACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGAT < 2:188490/76‑1
ATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGAT < 2:899088/76‑1
GGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCA < 1:1846027/76‑1
GGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAG < 1:837902/76‑1
ACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG > 1:1279016/1‑76
ACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG < 2:882160/76‑1
ACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > 2:1241681/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > REL606/3015771‑3015845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
