Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A72 F1 I1 R1
|
16 |
60.6 |
3810144 |
97.0% |
3695839 |
75.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,015,771 |
IS150 (–) +3 bp |
coding (1192‑1194/1677 nt) |
ECB_02816 → |
KpsD protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 63 (1.080) |
48/146 |
0.2 |
100% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3015771 = |
0 (0.000) | coding (1192/1677 nt) |
ECB_02816 |
KpsD protein |
| * |
? |
REL606 |
= 3015773 | 0 (0.000) | 79 (1.330) |
53/148 |
0.1 |
100% |
coding (1194/1677 nt) |
ECB_02816 |
KpsD protein |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGT > REL606/3015771‑3015844
cgTTTCAAAAGAGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:658881/74‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:794812/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:95822/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:847518/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:658867/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1664312/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:1875656/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 2:1270868/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1209224/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAC > 1:911140/1‑76
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACT > 1:1344633/1‑76
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACT > 1:281268/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTT < 2:510337/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTT < 1:1125013/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:16368/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:996383/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTC < 1:796967/76‑1
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCT < 1:1403371/76‑1
AAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCT < 1:1571634/76‑1
GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCC < 1:245870/76‑1
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT > 2:1381225/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT > 2:972412/1‑76
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCA > 2:1026570/1‑76
TTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCA < 1:564756/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATC > 2:1387634/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCC > 1:253558/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCA > 2:1181785/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCA > 1:348379/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAA > 1:1804601/1‑76
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGA > 1:1648983/1‑76
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAA > 1:427873/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:481954/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCGAGTCATCCACCAAAGAAGAAG < 1:1133695/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAG < 1:1602164/76‑1
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGC > 1:597583/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGC > 2:1519825/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCC < 1:872330/76‑1
GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAG < 2:11237/76‑1
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGC > 1:342013/1‑76
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGC > 1:408558/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCT < 1:3027/76‑1
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGC > 1:1136853/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG > 2:444545/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAAT < 2:1246876/76‑1
ATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAAT < 2:485611/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 1:1133190/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 1:1413845/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCACCCACCAAAGAAGAAGCCAGCCTGCGAATGC < 2:1729848/76‑1
TCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCA < 1:195468/76‑1
CGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAG < 2:1794070/76‑1
GTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGG < 1:800534/76‑1
CCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCA < 2:1676428/76‑1
CAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCAC < 1:44055/76‑1
CAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCAC < 1:1181785/76‑1
ACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAA < 1:1054531/76‑1
ACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAA > 2:1573773/1‑76
ACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAA < 2:675267/76‑1
AAAATGGGTGCAGTACCCTTTCTGCCGAGTCACCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACT < 1:1760455/76‑1
AAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACT > 1:969181/1‑76
AAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTG > 2:1571725/1‑76
AATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGA > 2:1902752/1‑76
ATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGAT > 2:1850924/1‑76
TGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATC > 1:424688/1‑76
GGTGCAGTACACTTTCTGCCCAGTCACCCACAAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAG < 1:1201914/76‑1
GTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGC < 1:144137/76‑1
GCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCG > 1:7470/1‑76
CAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGC > 2:1299144/1‑76
CAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGC > 1:480034/1‑76
AGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCT > 1:1228464/1‑76
GTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTT > 2:1808036/1‑76
TACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTT < 1:572437/76‑1
TACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTT > 1:1115280/1‑76
CACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGT < 1:385974/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGT > REL606/3015771‑3015844
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
