Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A127 F1 I1 R1
|
15 |
330.5 |
20417406 |
95.5% |
19498622 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,015,771 |
IS150 (–) +3 bp |
coding (1192‑1194/1677 nt) |
ECB_02816 → |
KpsD protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 407 (1.320) |
131/146 |
0.0 |
99.5% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3015771 = |
2 (0.010) | coding (1192/1677 nt) |
ECB_02816 |
KpsD protein |
| * |
? |
REL606 |
= 3015773 | 2 (0.010) | 466 (1.490) |
129/148 |
0.0 |
99.6% |
coding (1194/1677 nt) |
ECB_02816 |
KpsD protein |
| ? | REL606 |
= 3894996 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
Only 100 of 472 total aligned reads displayed.
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > REL606/3015771‑3015845
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:6972632/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:8661436/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:5849318/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:9991523/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:2566336/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:2732056/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:1891295/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 2:9832302/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:4327055/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:7462056/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:8849289/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 1:3036351/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 2:4220389/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAC < 2:341808/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAC > 2:129153/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAC < 1:4452015/76‑1
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACT > 1:8236418/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:9890644/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 2:5631164/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 2:5739241/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:6633398/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTT > 1:608841/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTC < 2:4624100/76‑1
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTC > 1:1144456/1‑76
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTC > 1:4560590/1‑76
AAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTG > 1:9732928/1‑76
GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCC > 1:5848955/1‑76
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAG > 1:8394320/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT > 2:2284292/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGT < 2:10149561/76‑1
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTC > 1:6521527/1‑76
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTC < 1:2126410/76‑1
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGACCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTC < 1:2214926/76‑1
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATC > 2:2955810/1‑76
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATC > 2:5196094/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCC < 2:6004724/76‑1
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCC > 2:4016523/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCC < 1:937273/76‑1
TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACC > 1:5292828/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCA < 1:2726123/76‑1
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAA > 1:6481367/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAA > 1:3556206/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAA > 1:5580535/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAG > 2:6349223/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAG > 1:3173443/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAG > 1:9020711/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAG > 1:8552017/1‑76
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAG < 1:7251919/76‑1
ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAA < 2:550105/76‑1
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAG > 1:440591/1‑76
TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAG > 1:2005191/1‑76
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGA > 1:2446058/1‑76
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGA > 1:7852540/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 2:5441155/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 2:9057311/1‑76
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA < 1:7665297/76‑1
TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAA > 1:9586369/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTTATCCACCAAAGAAGAAGCC > 2:320013/1‑76
GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAG < 2:4270331/76‑1
GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAG > 1:2864303/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCT < 1:4839990/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCT > 2:9570922/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > 2:2129713/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG < 1:6235065/76‑1
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTG > 1:5174705/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG > 1:3887543/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG < 2:3646151/76‑1
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG < 2:7997457/76‑1
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG > 2:444495/1‑76
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCG > 2:4793452/1‑76
CCATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGA > 1:9264010/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAAT > 1:4064867/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCA > 2:3786660/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCA < 1:8447338/76‑1
CATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAG > 2:7650901/1‑76
CATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAG < 1:6835634/76‑1
ATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGG < 2:1386161/76‑1
ATCGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGG < 2:8255067/76‑1
CGTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAG < 1:10084548/76‑1
GTCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGG < 1:6366665/76‑1
TCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGC < 1:8015478/76‑1
TCCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGC > 1:3441152/1‑76
CCAACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCA > 2:9265314/1‑76
ACAAAATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAA > 2:4997891/1‑76
aAAAATGGGGGCAGTACCTTTCCTGCCCAGTCATCCCCCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAAC < 2:6711790/75‑1
AATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGA < 2:1230577/76‑1
ATGGGTGCAGTCCCCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGAT < 2:8517030/76‑1
ATGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGAT > 1:1430556/1‑76
TGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATC > 2:1584510/1‑76
TGGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATC > 2:6893748/1‑76
GGGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCA > 1:5945516/1‑76
GGTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAG > 2:6566799/1‑76
GTGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGC > 2:1167018/1‑76
TGCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCC > 1:9479556/1‑76
GCAGTACCCTTTCTGCCTGGTCATCCACCAAAAAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCG < 1:3789907/76‑1
GCAGTACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCG > 2:5068493/1‑76
TACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTT < 1:2373035/76‑1
TACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTT > 1:1705087/1‑76
ACACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTG > 2:8865535/1‑76
ACTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > 2:7693408/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2775801‑2775877
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCTTTCTGCCCAGTCATCCACCAAAGAAGAAGCCAGCCTGCGAATGCAGGAGGCACAACTGATCAGCCGCTTTGTG > REL606/3015771‑3015845
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
