Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A101 F1 I1 R1
|
20 |
160.9 |
10398134 |
92.8% |
9649468 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,094 |
(ACAGGC)3→2 |
coding (675‑680/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014087 = | 3 (0.020) | 130 (1.000) |
68/124 |
0.3 |
98.3% |
coding (668/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014080 |
2 (0.020) | coding (661/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
Only 100 of 177 total aligned reads displayed.
TACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014174‑3014087
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTT < REL606/3014080‑3014006
TACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCG < 1:2796140/76‑1
TACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCG < 1:5009814/76‑1
TACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCCTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCG > 2:256986/1‑76
CGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCC > 2:47675/1‑76
CGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCC < 2:3469428/76‑1
CGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCC < 2:1985106/76‑1
CGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCC > 1:1400712/1‑76
cCAGCAAGTCCCGCAGTTCCGCTTCCATCTGGTTCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTG < 2:1733576/75‑1
AGCAATTCCCGCAGTTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTG < 2:1723914/76‑1
AGCAATTCCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTG < 2:4167303/76‑1
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC < 2:2281951/76‑1
CAAGTCCCGCAGGTCCGCTTCCATCTGGATCTTCTGCCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC < 2:4046802/76‑1
AAGTTCCGCAGGTCCTCTCCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCT < 1:579674/76‑1
AAGTCCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCT < 1:2703372/76‑1
AGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 2:3765462/1‑76
GCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATC > 1:2124760/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCC > 1:2180234/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCC < 1:4798861/76‑1
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCC > 2:1760592/1‑76
CAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCC > 1:1724903/1‑76
AGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCA > 2:3800577/1‑76
GGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAG < 1:958519/76‑1
GTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGA > 1:1216721/1‑76
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAAC > 2:1605763/1‑76
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAAC < 1:4966141/76‑1
CCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCAGTGGATCCAGAAC > 1:2103183/1‑76
CGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACG < 2:2081097/76‑1
CTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTATCGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTT < 1:848754/76‑1
TTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTG < 2:2115628/76‑1
TTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTG > 1:4869246/1‑76
TCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGT > 2:1853786/1‑76
CCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTT > 2:4255222/1‑76
TCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTTCCTGTGGATCCAGAACGTTGTTGTT > 2:4189723/1‑76
CTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTG > 1:1820518/1‑76
CTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTG > 1:3195194/1‑76
gaATCTTCGGCCCCATCAGCGTATTCACTAACGTGCTCCCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTC < 2:4798892/74‑1
GGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTC > 1:3551100/1‑76
GGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTC > 2:4992528/1‑76
tttTTCTGGCCCATCAGCTTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTT < 2:326850/73‑1
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG > 1:3601783/1‑76
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG > 1:1451522/1‑76
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGA > 2:4930124/1‑76
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGA > 1:152715/1‑76
TTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGAT < 2:2396643/76‑1
TTCGGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGAT < 1:2833432/76‑1
tcgGGCCCATCAGCTTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATA < 2:3568280/73‑1
TCTGGCCCATCAGCTTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGGGGTGGTTGTCTTGATA < 1:4851025/76‑1
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATA > 2:885756/1‑76
TCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATA < 1:1500449/76‑1
CTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAA > 2:2195584/1‑76
CTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGAACCAGAACGTTGATGCTGTCTTGATAA > 1:4823064/1‑76
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAG > 2:4525817/1‑76
GGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGA > 1:4500559/1‑76
GCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAG < 1:2585195/76‑1
GCCCACCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAG < 2:1817498/76‑1
CCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAG < 2:1371791/76‑1
CCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAG < 2:738708/76‑1
CATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGC < 1:770899/76‑1
CAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAAT > 1:4107028/1‑76
CGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCC < 2:1958272/76‑1
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCG < 1:802089/76‑1
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCG > 1:450056/1‑76
ATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCT > 1:1998068/1‑76
TCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT > 1:3872544/1‑76
CACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTTTCTTGATAAGAGAGCAATTCCGCTTTG < 2:3955657/76‑1
ACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGC > 2:3611253/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 2:287671/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 2:2437200/1‑76
AACGTGCTCGCCGCCTGTTCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGG < 1:4189723/76‑1
AACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGG > 1:2436125/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGG > 1:4528107/1‑76
ACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGC < 2:957608/76‑1
GTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTTCTGGCGT > 2:1713232/1‑76
TGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTC > 1:1683887/1‑76
TGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTC < 1:3945262/76‑1
TGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTC > 1:40424/1‑76
GCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 1:1315526/1‑76
GCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC > 2:2601455/1‑76
CTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCA > 1:1733594/1‑76
CGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA < 2:4428981/76‑1
CGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGA > 2:321312/1‑76
GCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 2:1508422/76‑1
GCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 1:3667387/76‑1
CGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGC > 2:281450/1‑76
CGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGC > 1:4920173/1‑76
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT > 2:2408120/1‑76
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG > 1:3346416/1‑76
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG > 2:543310/1‑76
TGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC < 2:1672149/76‑1
TGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC < 1:433472/76‑1
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG > 1:157780/1‑76
TGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGT > 2:125056/1‑76
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG > 1:624205/1‑76
CTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCC < 1:3646375/76‑1
CTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCC > 2:3140486/1‑76
TGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCT > 1:2336276/1‑76
GTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTT < 2:541715/76‑1
GTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTT < 2:4097898/76‑1
TGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT < 1:598203/76‑1
GGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTT > 1:3243030/1‑76
TACGTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014174‑3014087
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTTT < REL606/3014080‑3014006
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
