Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A91 F1 I1 R1
|
18 |
55.4 |
3661525 |
95.1% |
3482110 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,014,094 |
(ACAGGC)3→2 |
coding (675‑680/1137 nt) |
ECB_02815 → |
Capsule polysaccharide export inner‑membrane protein kpsE |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3014087 = | 1 (0.020) | 42 (0.900) |
33/124 |
0.3 |
97.9% |
coding (668/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
| ? | REL606 |
= 3014080 |
1 (0.020) | coding (661/1137 nt) |
ECB_02815 |
Capsule polysaccharide export inner‑membrane protein kpsE |
GTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014171‑3014087
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT < REL606/3014080‑3014007
GTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCT < 1:1269715/76‑1
CAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGT > 2:258136/1‑76
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC > 2:425848/1‑76
CAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCC > 1:640879/1‑76
AAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCT < 2:1415261/76‑1
AGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTG > 2:1742576/1‑76
TTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG < 2:1021901/76‑1
TCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCNCCTGTGCCTGTGG < 1:1230951/76‑1
TCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGG > 1:1095111/1‑76
AGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCA < 2:1404986/76‑1
TCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAA < 1:1769571/76‑1
TCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAA < 2:936760/76‑1
CGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACG > 1:1023694/1‑76
CTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTT > 1:1566408/1‑76
TTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTG > 1:1287836/1‑76
TCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGTTCCAGAAGGTTGT > 2:1027046/1‑76
CCATCTGGATCTTCTGGCCCCTCAGCGTATTCCCTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTT < 1:1631159/76‑1
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTG > 2:1664722/1‑76
CATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTG < 1:1258404/76‑1
TGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGT < 2:1304680/76‑1
TGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGT > 2:711382/1‑76
GGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTC > 1:894699/1‑76
GATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCT < 2:1436197/76‑1
GATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCT > 1:441892/1‑76
ATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGGTGTTGTTGTCTT > 2:862282/1‑76
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 2:297764/76‑1
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 1:1335002/76‑1
TCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTG < 2:702933/76‑1
CTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGA < 2:1160981/76‑1
CTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAA < 1:1612994/76‑1
TGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAG > 2:124844/1‑76
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGA < 2:451329/76‑1
CCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGA < 2:1259134/76‑1
ATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCA > 1:774399/1‑76
GTATTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCG < 2:276684/76‑1
ATTCACTAACGTGCTCGCCGCCGGTGCCTGTGGATCCAGAACGGTGTTGTTGTCTTGATAAGAGAGCAATTCCGCT > 2:917221/1‑76
TTCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTT < 1:1536011/76‑1
TCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:796880/76‑1
TCACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTT < 1:1057661/76‑1
CACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG > 2:1516968/1‑76
CACTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTG > 1:1121710/1‑76
CTAACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCT > 1:454946/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGG > 2:1307981/1‑76
AACGTGCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGG > 2:1161393/1‑76
GCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC < 1:468618/76‑1
GCTCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCC < 1:226854/76‑1
TCGCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAG < 1:280720/76‑1
GCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 2:1433486/76‑1
GCCGCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGAC < 1:891274/76‑1
GCCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCT > 1:1634135/1‑76
CCTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG > 2:570704/1‑76
CCTGTGCCTGTGGATCCAGAACGATGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTG < 2:908318/76‑1
CTGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGG < 1:857917/76‑1
TGTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGC > 1:382610/1‑76
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG > 2:611772/1‑76
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG < 2:1581574/76‑1
GTGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCG > 1:1029583/1‑76
TGCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGT < 2:1437747/76‑1
GCCTGTGGATCCAGAGCGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:378672/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG < 2:471369/76‑1
GCCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTG > 1:1216611/1‑76
CCTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGATGCTGGCGTGC > 2:1279910/1‑76
CTGTGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCC > 1:1737909/1‑76
TGGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCAGGCGTGCCTTT < 2:722767/76‑1
GTCAGCAAGTTCCGCAGGTCCGCTTCCATCTGGATCTTCTGGCCCATCAGCGTATTCACTAACGTGCTCGCCGCCTGTGCCTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3014171‑3014087
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgtgcctgtgGATCCAGAACGTTGTTGTTGTCTTGATAAGAGAGCAATTCCGCTTTGCTGGCGTCCAGACGCTGGCGTGCCTTT < REL606/3014080‑3014007
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
