Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F1 I1 R1
|
21 |
62.2 |
4089897 |
94.3% |
3856772 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
1,812,834 |
IS150 (+) +3 bp |
coding (92‑94/549 nt) |
ynjA → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
664688 = | NA (NA) | 83 (1.330) |
51/150 |
0.1 |
100% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 1812836 |
0 (0.000) | coding (94/549 nt) |
ynjA |
hypothetical protein |
| * |
? |
REL606 |
1812834 = | 0 (0.000) | 58 (0.960) |
46/146 |
0.2 |
100% |
coding (92/549 nt) |
ynjA |
hypothetical protein |
| ? | REL606 |
2774435 = |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664762‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTTGC < REL606/1812836‑1812762
TTTCAAAAGGGTNTTNTGGCTTTGACATATTAGGNGCTATTTCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:1671531/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACACAATGGGTGCAGTACAG > 2:798342/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:587636/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1355035/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 2:798321/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 2:1165218/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:1597050/76‑1
TTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTAATCGTCCAACAAAATGGGTGCAGTACAGA < 2:440752/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAA < 1:769352/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAA < 1:868463/76‑1
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAA > 2:225822/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAAT > 1:1074488/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAAT < 1:920969/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAAT > 1:1449703/1‑76
GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTT < 1:1559988/76‑1
GTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTT < 1:1149464/76‑1
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTA > 1:1521991/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAG > 1:727842/1‑76
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGC < 1:387811/76‑1
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGC > 1:439549/1‑76
TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCAC > 1:1379471/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCT > 2:1853897/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCT > 1:771146/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCC > 2:953192/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCC > 2:562888/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCC > 2:566600/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCC > 2:906086/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCG > 2:1872354/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCG < 2:1312884/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTA < 2:583245/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTA < 2:433949/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAA < 2:1817311/76‑1
TATTAGGGNCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATG > 1:1952482/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCG < 2:694171/76‑1
AGGGGCTNCTCCATTTCATCGTCCAACAACATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGA > 2:1641995/1‑76
AGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGA > 1:759717/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGAC < 1:1269336/76‑1
GGGCTATTCCATTTCATCGTCTAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACG < 1:1587571/76‑1
GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGTGACG < 1:139175/76‑1
GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACG < 2:1924864/76‑1
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTATAGAATGGGGCTTGGCACCTCGCNGTAATGGCGACGAT < 1:5140/76‑1
GCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGAT < 2:1379470/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATG > 1:592510/1‑76
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGTGACGATGC < 2:1194026/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGC < 2:1527551/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGC < 2:1838617/76‑1
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCA > 2:928442/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCA > 1:267726/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCA < 1:372173/76‑1
TCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAACGGCGACGATGCAGC > 1:148325/1‑76
CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCA < 2:1861840/76‑1
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCAC > 1:682354/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCAC < 1:1326282/76‑1
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCAC < 2:517251/76‑1
TCATCTTCCAACAAAATGGGTGCAGTACAAAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCa < 2:654758/76‑2
TCATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCC > 2:1082280/1‑76
CATCGTGCAACAAAATGCATGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACNATNCAGCCACGCCT > 2:309548/1‑76
CATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCT < 1:809283/76‑1
ATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCCCCTCGCCGTAATGGCGACGATGCAGCCACGCCTG < 2:1559642/76‑1
ATCGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTCAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTG > 1:1716840/1‑76
CGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTG > 1:1282435/1‑76
CGTCCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTG > 1:909818/1‑76
CCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGAC > 2:915317/1‑76
CCAACAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGAC > 1:1555419/1‑76
CAACAAACTGTGTGCAGTTCAGAAGGGGGCTTATCACCTNNCCGTAATNGCGACGATGCAGCCACGCCTGTGGACG < 1:2001674/76‑1
aAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAA < 2:92469/75‑1
CAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAA > 2:507740/1‑76
CAAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAA < 1:755260/76‑1
AAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAA > 2:1439281/1‑76
AAAATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAA > 2:382374/1‑76
ATGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATT > 2:467325/1‑76
TGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTA > 2:659014/1‑76
TGGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTA > 2:903876/1‑76
GGGTGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAA > 1:1400616/1‑76
TGCAGTACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGGGGACGTAAAATTAAAGG < 1:2024641/76‑1
CAGTACAGAATGGGGCTTAGCCCCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAAAAAAAGGAA < 2:1216698/76‑1
TACAGAATGGGGCTTAGCCCCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTT < 2:1355034/76‑1
ACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTT < 2:1472328/76‑1
ACAGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTT > 2:1087715/1‑76
ACAGAAGGGGGCTTAGCCCCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTT < 2:431158/76‑1
AGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTTGC > 2:353225/1‑76
AGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTTGC > 2:409403/1‑76
AGAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTTGC > 2:776051/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664762‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATGGGGCTTAGCACCTCGCCGTAATGGCGACGATGCAGCCACGCCTGTGGACGTAAAATTAAAGGAATTTTGC < REL606/1812836‑1812762
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
