Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F999 I0 R1
|
75 |
109.1 |
8321009 |
96.7% |
8046415 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,651,293 |
Δ2,422 bp |
|
[yhiS]–yhiS |
[yhiS], insH‑11, yhiS |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3651293 |
3653714 |
2422 |
225 [0] |
[0] 224 |
[yhiS]–yhiS |
[yhiS],insH‑11,yhiS |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3651292 | 0 (0.000) | 208 (2.010) |
85/94 |
0.0 |
100% |
pseudogene (2/746 nt) |
yhiS |
putative uncharacterized protein YhiS |
| ? | NC_000913 |
3653715 = |
0 (0.000) | intergenic (+2/‑246) |
yhiS/slp |
putative uncharacterized protein YhiS/starvation lipoprotein |
GATK/CNVnator alignment
N/A
