Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R2
|
64 |
60.0 |
3197630 |
92.7% |
2964203 |
60.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,523,621 |
C→T |
G32S (GGT→AGT) |
dinD ← |
DNA‑damage‑inducible protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,523,621 | 0 | C | T | 100.0%
| 185.2
/ NA
| 55 | G32S (GGT→AGT) | dinD | DNA‑damage‑inducible protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/34); total (21/34) |
CCACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGT > minE/2523554‑2523679
|
ccACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag < 1:1929312/71‑1 (MQ=255)
aCTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCag > 1:1441128/1‑69 (MQ=255)
tGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagtagt > 1:678748/1‑71 (MQ=255)
gTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGtt > 1:2682067/1‑71 (MQ=255)
gTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGtt > 1:1764854/1‑71 (MQ=255)
acaGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTccc > 1:1572058/1‑69 (MQ=255)
ggCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:2677418/71‑1 (MQ=255)
cttcttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGt > 1:2297340/1‑71 (MQ=255)
cttcttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGt > 1:545184/1‑71 (MQ=255)
ttcttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAg > 1:2672914/1‑66 (MQ=255)
cttTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt < 1:2121721/70‑1 (MQ=255)
tttGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCt < 1:1451734/69‑1 (MQ=255)
tttGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTg > 1:2989273/1‑71 (MQ=255)
tGGCGCGCGTTAATACATGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCtt < 1:1535129/68‑1 (MQ=255)
tGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTg < 1:1146447/69‑1 (MQ=255)
tGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTg < 1:1894256/69‑1 (MQ=255)
tGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTg < 1:1376065/69‑1 (MQ=255)
tGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTg < 1:128141/69‑1 (MQ=255)
ggCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCt < 1:3180002/70‑1 (MQ=255)
gcgcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta < 1:2739417/47‑1 (MQ=255)
gcgcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta < 1:3033373/47‑1 (MQ=255)
gcgcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta < 1:2743061/47‑1 (MQ=255)
gcgcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta < 1:811018/47‑1 (MQ=255)
gcgcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCagta < 1:1019875/47‑1 (MQ=255)
gcgTTAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCAt > 1:2376471/1‑71 (MQ=255)
ttAATACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGt > 1:550983/1‑71 (MQ=255)
aaTACAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCt > 1:1963890/1‑60 (MQ=255)
aTACAGGTATAAAGTGACGATACTCTGAATAACTCa > 1:1994664/1‑36 (MQ=255)
cAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTg > 1:351660/1‑49 (MQ=255)
cAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGc < 1:972498/70‑1 (MQ=255)
cAGGTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCt < 1:468842/71‑1 (MQ=255)
ggTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTcc > 1:3181424/1‑71 (MQ=255)
gTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:255479/45‑1 (MQ=255)
gTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:2652622/45‑1 (MQ=255)
gTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:2275838/45‑1 (MQ=255)
gTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:2248445/45‑1 (MQ=255)
gTATAAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGtt < 1:421492/45‑1 (MQ=255)
tataAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGt < 1:222570/71‑1 (MQ=255)
ataAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGt > 1:1461696/1‑45 (MQ=255)
ataAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGt > 1:2278275/1‑45 (MQ=255)
taAAGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGtt < 1:1181888/70‑1 (MQ=255)
aGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCa < 1:1490128/71‑1 (MQ=255)
aGTGACGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCa < 1:775759/71‑1 (MQ=255)
aCGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTa < 1:3095527/70‑1 (MQ=255)
aCGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTa < 1:140199/70‑1 (MQ=255)
aCGATACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTa < 1:136391/70‑1 (MQ=255)
tACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAg < 1:3002445/71‑1 (MQ=255)
tACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAg < 1:2046675/71‑1 (MQ=255)
tACTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAg < 1:2480215/71‑1 (MQ=255)
aCTCTGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAAt > 1:1895399/1‑67 (MQ=255)
aCTCTGAATAACTCAGTAGTTTCACAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAAt > 1:1750622/1‑67 (MQ=255)
ctctGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGt < 1:409266/70‑1 (MQ=255)
ctctGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGt < 1:1206579/70‑1 (MQ=255)
tGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGa > 1:1590689/1‑36 (MQ=255)
tGAATAACTCAGTAGTTTCCCAAGTTGTCTTGCTGa > 1:255990/1‑36 (MQ=255)
|
CCACTGTTCTCACAGGCTTCTTTGGCGCGCGTTAATACAGGTATAAAGTGACGATACTCTGAATAACCCAGTAGTTTCCCAAGTTGTCTTGCTGACCATTGTTCTGCTCCGTTTGCATTAATCAGT > minE/2523554‑2523679
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
