Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,151,211 |
A→G |
V2V (GTA→GTG) |
ydjQ → |
endonuclease of nucleotide excision repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,151,211 | 0 | A | G | 100.0%
| 177.2
/ NA
| 48 | V2V (GTA→GTG) | ydjQ | endonuclease of nucleotide excision repair |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (16/32); total (16/32) |
CTCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAA > minE/1151145‑1151254
|
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAATCAGCATTCGGAGTCAACAGTGGTGCgg > 1:919256/1‑70 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCgg > 1:922634/1‑70 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCgg > 1:3194343/1‑70 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1088808/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:26539/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1988218/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1894326/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1751951/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1047926/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:124461/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1519526/1‑71 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:1314358/1‑71 (MQ=255)
ttACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGaa < 1:3201192/69‑1 (MQ=255)
ttACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGaa < 1:2541009/69‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:1694770/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:2781150/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:275130/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:1579137/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:1137922/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:2570039/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:2551212/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:3274939/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:372915/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:1370947/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:1698446/71‑1 (MQ=255)
taACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCaa < 1:16917/71‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:324499/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:500165/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:566736/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:734960/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:743005/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:754577/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2681895/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2701846/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2454655/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2251192/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2211900/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:220555/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2032964/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:1856737/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:1429735/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:15813/57‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:1527745/57‑1 (MQ=255)
cAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTtc > 1:390733/1‑38 (MQ=255)
cAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGaa > 1:3250503/1‑57 (MQ=255)
cAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGaa > 1:423766/1‑57 (MQ=255)
cAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGaa > 1:8323/1‑57 (MQ=255)
aGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:1384447/38‑1 (MQ=255)
|
CTCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAA > minE/1151145‑1151254
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
