Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,151,211 |
A→G |
V2V (GTA→GTG) |
ydjQ → |
endonuclease of nucleotide excision repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,151,211 | 0 | A | G | 100.0%
| 249.2
/ NA
| 64 | V2V (GTA→GTG) | ydjQ | endonuclease of nucleotide excision repair |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/58); total (6/58) |
TAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCG > minE/1151153‑1151269
|
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:159231/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:439008/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:4224448/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:2153766/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:3869770/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:569655/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:2775490/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:629294/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:1651519/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:789365/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:848269/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:3850702/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:382196/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:130153/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:3745383/70‑1 (MQ=255)
tAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:3424519/70‑1 (MQ=255)
aaTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc < 1:117434/69‑1 (MQ=255)
aaTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACt < 1:4005317/70‑1 (MQ=255)
aaTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACt < 1:2007347/70‑1 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:2396069/51‑1 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:536711/51‑1 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:553133/51‑1 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:1321459/51‑1 (MQ=255)
ccGCCTGTTACACTGGATAGACAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:135013/51‑1 (MQ=255)
acacTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAAttt > 1:2455141/1‑70 (MQ=255)
acacTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAAttt > 1:2222574/1‑70 (MQ=255)
caggATAGATAACCAGCATTCGGAGTCAACAGTGCTGCGGCGt > 1:3427707/3‑43 (MQ=255)
cTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAg > 1:2355751/1‑71 (MQ=255)
cTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAg > 1:2249192/1‑71 (MQ=255)
cTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAg > 1:126537/1‑71 (MQ=255)
ctgCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:906384/68‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:4374644/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:1426241/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:29690/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:4320452/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:1582173/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:3572328/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:2533058/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:1832390/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:625811/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:490078/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:2484577/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:3905216/67‑1 (MQ=255)
cATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:2697202/67‑1 (MQ=255)
aTTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAttt < 1:407107/66‑1 (MQ=255)
aTTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATg < 1:4006163/69‑1 (MQ=255)
cGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAata < 1:2087847/70‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:213081/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:4206958/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:678183/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:803891/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:1073165/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:4238325/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:2675128/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3164009/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:2755532/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:2800172/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:2855181/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3645205/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3516178/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3111019/71‑1 (MQ=255)
gTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3169039/71‑1 (MQ=255)
tCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:2920613/70‑1 (MQ=255)
tCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCg < 1:3556237/70‑1 (MQ=255)
|
TAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCG > minE/1151153‑1151269
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
