Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,151,211 |
A→G |
V2V (GTA→GTG) |
ydjQ → |
endonuclease of nucleotide excision repair |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,151,211 | 0 | A | G | 100.0%
| 111.3
/ NA
| 32 | V2V (GTA→GTG) | ydjQ | endonuclease of nucleotide excision repair |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/17); total (15/17) |
GCCTCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTT > minE/1151143‑1151276
|
gCCTCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCg < 1:2787109/71‑1 (MQ=255)
ctctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGc > 1:2640552/1‑71 (MQ=255)
tctTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTgcggcg > 1:2427823/1‑71 (MQ=255)
ttttttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGtt > 1:1301406/1‑71 (MQ=255)
ttttttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGtt > 1:1885116/1‑71 (MQ=255)
ttttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGt < 1:1748680/68‑1 (MQ=255)
tttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGtt < 1:2685479/68‑1 (MQ=255)
tttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTa < 1:1009348/70‑1 (MQ=255)
tttAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTa < 1:471471/70‑1 (MQ=255)
aTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGTTGCGGCGTTTAACtt < 1:2049595/70‑1 (MQ=255)
aTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTtc < 1:1232601/71‑1 (MQ=255)
aTCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTtc > 1:509434/1‑71 (MQ=255)
gCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTgcggcg < 1:769890/59‑1 (MQ=255)
gCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTcc > 1:2573779/1‑71 (MQ=255)
ttCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGtt > 1:2794031/1‑59 (MQ=255)
ttCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCcgc > 1:843312/1‑71 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTa < 1:186094/58‑1 (MQ=255)
ccGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCgg < 1:1792220/70‑1 (MQ=255)
tGTTACACTGGATAGATAACCAGCATTCGGAGTCAAGAGTGGTGCGGCGttt > 1:303416/1‑52 (MQ=255)
cacTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTg < 1:2775777/70‑1 (MQ=255)
gatagataACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTg < 1:1660993/71‑1 (MQ=255)
gatagataACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTg > 1:2374303/1‑71 (MQ=255)
tagataACCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCg < 1:1112581/71‑1 (MQ=255)
aaCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc > 1:2416614/1‑38 (MQ=255)
aaCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc > 1:2079801/1‑38 (MQ=255)
aaCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc > 1:297140/1‑38 (MQ=255)
aaCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAAc > 1:1420838/1‑38 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAtt < 1:1762793/71‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAtt < 1:1759127/71‑1 (MQ=255)
aCCAGCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAAtt < 1:1287296/71‑1 (MQ=255)
gCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATg < 1:534897/71‑1 (MQ=255)
gCATTCGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATg < 1:2042058/71‑1 (MQ=255)
cGGAGTCAACAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCg > 1:1144204/1‑56 (MQ=255)
cAGTGGTGCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACAt > 1:1583626/1‑71 (MQ=255)
gtggtgCGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACAttt < 1:1910308/71‑1 (MQ=255)
|
GCCTCTTTTTTAATCGCTTCCCGCCTGTTACACTGGATAGATAACCAGCATTCGGAGTCAACAGTGGTACGGCGTTTAACTTCTCCGCGGCTCGAATTTGAAGCTGCGGCAATTTATGAATATCCCGAACATTT > minE/1151143‑1151276
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
