Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R1
|
122 |
92.7 |
4382561 |
94.3% |
4132755 |
66.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,632,970 |
A→G |
K421R (AAA→AGA) |
livM → |
leucine/isoleucine/valine transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,632,970 | 0 | A | G | 100.0%
| 178.2
/ NA
| 47 | K421R (AAA→AGA) | livM | leucine/isoleucine/valine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (26/21); total (26/21) |
GATCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAAAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGC > minE/2632902‑2633012
|
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:3482847/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:4318131/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:2224937/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:545425/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:55591/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:2127103/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:4127511/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:662362/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:4042623/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:396037/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:3811800/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:2917646/1‑71 (MQ=255)
gatCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag > 1:372669/1‑71 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:4026022/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:3784550/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:3681771/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:3628554/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:4368234/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:944822/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:1100650/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:1755720/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:1387235/70‑1 (MQ=255)
atCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:852806/70‑1 (MQ=255)
tCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:3949453/69‑1 (MQ=255)
gCGTCCGCAGGGCTTGCTGCCCTTGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAgg < 1:1569932/66‑1 (MQ=255)
gCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAgg < 1:2122682/66‑1 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:3924297/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:92730/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:913465/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:3789215/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:3340146/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:3955482/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:730739/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:720391/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:4309752/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:481739/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2701507/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2348938/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2464259/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2473496/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2507262/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2061691/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2179436/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2883165/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:3134332/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:1370410/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:2343869/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAgg > 1:1037223/1‑71 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAg > 1:1556481/1‑70 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAg > 1:31486/1‑70 (MQ=255)
tCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAg > 1:3609464/1‑70 (MQ=255)
cGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCa > 1:640251/1‑71 (MQ=255)
gCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGagag < 1:4108028/54‑1 (MQ=255)
tGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATtattat < 1:2653230/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:3253671/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:1726537/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:1217786/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:2244146/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:4115232/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:3870535/71‑1 (MQ=255)
cgcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:366643/71‑1 (MQ=255)
gcCCGCAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGtt < 1:2341030/70‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:4313231/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:2303007/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:2180034/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:3957613/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:1603949/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:3153854/71‑1 (MQ=255)
cAACTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:1098690/71‑1 (MQ=255)
aaCTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:224749/70‑1 (MQ=255)
aaCTGAAGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:2754146/70‑1 (MQ=255)
cTGATGCTGAAAAACGGCGCAGCGAGAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGc < 1:2584579/68‑1 (MQ=255)
|
GATCTGGCGTCCGCAGGGCTTGCTGCCCATGACGCGCCCGCAACTGAAGCTGAAAAACGGCGCAGCGAAAGGAGAGCAGGCATGAGTCAGCCATTATTATCTGTTAACGGC > minE/2632902‑2633012
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
