Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I3 R2
|
122 |
64.1 |
3058059 |
97.6% |
2984665 |
63.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
1,509,579 |
G→A |
A42T (GCA→ACA) |
ackA → |
acetate kinase A and propionate kinase 2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,509,579 | 0 | G | A | 100.0%
| 205.9
/ NA
| 69 | A42T (GCA→ACA) | ackA | acetate kinase A and propionate kinase 2 |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (31/38); total (31/38) |
TCATCGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAGCACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTCAC > minE/1509514‑1509644
|
tcatcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACa > 1:30151/1‑68 (MQ=255)
tcatcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACg > 1:2060124/1‑70 (MQ=255)
tcatcGATGAAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACa > 1:592566/1‑68 (MQ=255)
cagcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTa > 1:1304540/4‑71 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTTGTTTAGCCGAATGTCTCCACCTGCCCGAAACACGTAt > 1:200910/1‑71 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACa > 1:2833852/1‑66 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTa < 1:2911928/70‑1 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTa < 1:1764498/70‑1 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTAt < 1:1324191/71‑1 (MQ=255)
atcGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTAt < 1:1487246/71‑1 (MQ=255)
aTGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaa > 1:714200/1‑71 (MQ=255)
aGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatgga < 1:833424/71‑1 (MQ=255)
tAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaa > 1:727057/1‑70 (MQ=255)
aaaTGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaaaa > 1:1381020/1‑71 (MQ=255)
aaTGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaaaa < 1:932670/70‑1 (MQ=255)
aTGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggataatg < 1:476158/71‑1 (MQ=255)
aTGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaaaatg < 1:628950/71‑1 (MQ=255)
tGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaaaatg > 1:482417/1‑70 (MQ=255)
tGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatggaaaatg > 1:485945/1‑70 (MQ=255)
tGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCa < 1:2237569/56‑1 (MQ=255)
tGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACg < 1:2313102/71‑1 (MQ=255)
tGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACg < 1:1321734/71‑1 (MQ=255)
tagagTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACgg < 1:2196961/69‑1 (MQ=255)
aaGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCaaatgga < 1:731445/60‑1 (MQ=255)
aaGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACgg < 1:1701557/70‑1 (MQ=255)
aaGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACgg > 1:739606/1‑70 (MQ=255)
gTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATa < 1:1612865/71‑1 (MQ=255)
tACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATaa < 1:698692/71‑1 (MQ=255)
tACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATa < 1:1878721/70‑1 (MQ=255)
ccTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATaaa > 1:1621851/1‑70 (MQ=255)
ccTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAAc < 1:1303092/71‑1 (MQ=255)
ttCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAg > 1:76562/1‑70 (MQ=255)
ttCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAg > 1:2458151/1‑70 (MQ=255)
tCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACTTATCAAATGGAAAATGGACGGCAATAAACAgg < 1:2194275/70‑1 (MQ=255)
tCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAgg < 1:1921199/70‑1 (MQ=255)
tCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAg < 1:823925/69‑1 (MQ=255)
cTGGTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGAc > 1:908717/1‑56 (MQ=255)
ggTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCa < 1:2443085/40‑1 (MQ=255)
gTTTAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGaa < 1:2741270/68‑1 (MQ=255)
ttAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCa > 1:2287579/1‑55 (MQ=255)
tAGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCt > 1:1426327/1‑71 (MQ=255)
aGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCt < 1:102117/70‑1 (MQ=255)
aGCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCt < 1:1619107/70‑1 (MQ=255)
gCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCttt < 1:2925281/71‑1 (MQ=255)
gCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCttt < 1:1674586/71‑1 (MQ=255)
gCCGAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCttt < 1:725320/71‑1 (MQ=255)
gAATGTTTCCACCTGCCCGAAACACGTATCaaatggaa > 1:329264/1‑38 (MQ=255)
gAATGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAgg > 1:694023/1‑71 (MQ=255)
aaTGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAg < 1:1812765/56‑1 (MQ=255)
aTGTTTCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTg < 1:330829/71‑1 (MQ=255)
tttCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACa > 1:2039074/1‑51 (MQ=255)
tttCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACa > 1:1891875/1‑51 (MQ=255)
tttCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCa < 1:1903566/70‑1 (MQ=255)
ttCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAg < 1:804336/70‑1 (MQ=255)
tCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAAc > 1:913671/1‑48 (MQ=255)
tCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAAc > 1:2543699/1‑48 (MQ=255)
tCCACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAgg > 1:7564/1‑70 (MQ=255)
ccACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAg < 1:961732/62‑1 (MQ=255)
ccACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAg < 1:912961/62‑1 (MQ=255)
cACCTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGgcgc > 1:2123750/1‑71 (MQ=255)
cTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAAc > 1:1687326/1‑43 (MQ=255)
cTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGgcgc < 1:1998882/68‑1 (MQ=255)
cTGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGcgccgc < 1:2840711/71‑1 (MQ=255)
tGCCCGAAACACGTATCAAATGGAAAATGGACGGCAATa > 1:2334407/1‑39 (MQ=255)
ccGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTcac < 1:2241508/71‑1 (MQ=255)
ccGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTca > 1:2832146/1‑70 (MQ=255)
ccGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTca > 1:494061/1‑70 (MQ=255)
cGAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTca > 1:976570/1‑69 (MQ=255)
gAAACACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCa < 1:1311431/57‑1 (MQ=255)
|
TCATCGATGCAGTAAATGGTGAAGAGTACCTTTCTGGTTTAGCCGAATGTTTCCACCTGCCCGAAGCACGTATCAAATGGAAAATGGACGGCAATAAACAGGAAGCGGCTTTAGGTGCAGGCGCCGCTCAC > minE/1509514‑1509644
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
