Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R2
|
328 |
63.0 |
4687567 |
98.0% |
4593815 |
65.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,222,206 |
C→T |
N306N (AAC→AAT) |
ebgA → |
cryptic beta‑D‑galactosidase, alpha subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,222,206 | 0 | C | T | 100.0%
| 241.2
/ NA
| 79 | N306N (AAC→AAT) | ebgA | cryptic beta‑D‑galactosidase, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (51/28); total (51/28) |
CAGCAATGGTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAACGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTGGA > W3110S.gb/3222138‑3222273
|
cagcaATGGTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGt < 1:3000214/71‑1 (MQ=255)
agcaATGGTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGtt < 1:730061/71‑1 (MQ=255)
agcaATGGTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGt < 1:793111/70‑1 (MQ=255)
ggTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTgg > 1:1814381/1‑69 (MQ=255)
gTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTc > 1:1201155/1‑65 (MQ=255)
gTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTgg > 1:415173/1‑68 (MQ=255)
gTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAg > 1:448255/1‑71 (MQ=255)
gTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGAAGCCAACGGCAATGTTc > 1:769387/1‑65 (MQ=255)
tCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:1077928/71‑1 (MQ=255)
tCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:3891588/71‑1 (MQ=255)
tCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:2591154/71‑1 (MQ=255)
tCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:2470097/71‑1 (MQ=255)
agcagAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTc < 1:4306882/62‑1 (MQ=255)
tCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCcac > 1:1260539/1‑70 (MQ=255)
tCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCcac > 1:4533023/1‑70 (MQ=255)
tCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCcac > 1:4055911/1‑70 (MQ=255)
tCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCcac > 1:4533583/1‑70 (MQ=255)
tCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCcac > 1:2017343/1‑70 (MQ=255)
cccTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACaa > 1:3497203/1‑70 (MQ=255)
cTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAAcgc < 1:3740493/71‑1 (MQ=255)
tATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGt > 1:42048/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:386623/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:479090/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:4103266/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:4313463/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:4277627/1‑71 (MQ=255)
aTCTTTACCATCTGGTCATGACGCTGAAAGACACCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGtt > 1:828490/1‑71 (MQ=255)
tCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGGAGTGGTGCCACAACGCGTTg > 1:1558895/1‑71 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTc > 1:2726879/1‑43 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCtt > 1:2200658/1‑71 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCtt > 1:1636074/1‑71 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCtt > 1:2746535/1‑71 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCtt > 1:3364381/1‑71 (MQ=255)
tACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCtt > 1:2566919/1‑71 (MQ=255)
aTCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:1978877/71‑1 (MQ=255)
aTCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:4123928/71‑1 (MQ=255)
aTCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:3107798/71‑1 (MQ=255)
aTCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:1959789/71‑1 (MQ=255)
tCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgtggt < 1:1316299/48‑1 (MQ=255)
tCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTcc < 1:893630/68‑1 (MQ=255)
tCTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:2735207/70‑1 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgtggt < 1:629549/47‑1 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCca > 1:1994497/1‑51 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACaa > 1:3254905/1‑54 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCt > 1:2595731/1‑64 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGt < 1:3393923/69‑1 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTg > 1:1927207/1‑70 (MQ=255)
cTGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:3039793/1‑71 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:2881043/43‑1 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAgt < 1:1909991/43‑1 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:4402972/1‑70 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:3208626/1‑70 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:3014736/1‑70 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:2426995/1‑70 (MQ=255)
tGGTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:552179/1‑70 (MQ=255)
tGGACATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa > 1:2394036/1‑70 (MQ=255)
gTCATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGa < 1:1123690/68‑1 (MQ=255)
cATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATc > 1:360153/1‑70 (MQ=255)
cATGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATc > 1:4448261/1‑70 (MQ=255)
aTGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCaa < 1:1497999/71‑1 (MQ=255)
aTGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCa > 1:3573072/1‑70 (MQ=255)
aTGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCa > 1:1747590/1‑70 (MQ=255)
aTGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCa > 1:3039848/1‑70 (MQ=255)
tGACGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCaa < 1:997138/70‑1 (MQ=255)
aCGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGt > 1:4480728/1‑71 (MQ=255)
aCGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGt > 1:2001531/1‑71 (MQ=255)
aCGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGt > 1:1494978/1‑71 (MQ=255)
aCGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGt > 1:3858302/1‑71 (MQ=255)
cGCTGAAAGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGt > 1:1160470/1‑70 (MQ=255)
aaaGACGCCAACGGCAATGTTCTGGAAGTGGTG‑CACAACGCGTTGGCTTCCGTGATATCAAAGTGcgcg < 1:4573467/69‑1 (MQ=255)
aGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACg < 1:2256251/71‑1 (MQ=255)
aGACGCCAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACg > 1:3323962/1‑71 (MQ=255)
cAACGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGt < 1:1937940/71‑1 (MQ=255)
aCGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCa < 1:2178818/51‑1 (MQ=255)
aCGGCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCa < 1:1556148/51‑1 (MQ=255)
ggCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTg > 1:958581/1‑71 (MQ=255)
gCAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTg > 1:2595532/1‑70 (MQ=255)
cAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTGGa > 1:4514342/1‑71 (MQ=255)
cAATGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTGGa > 1:4352028/1‑71 (MQ=255)
|
CAGCAATGGTCAGCAGAATCCCCTTATCTTTACCATCTGGTCATGACGCTGAAAGACGCCAACGGCAACGTTCTGGAAGTGGTGCCACAACGCGTTGGCTTCCGTGATATCAAAGTGCGCGACGGTCTGTTCTGGA > W3110S.gb/3222138‑3222273
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
