Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F129 I0 R1 205 159.3 7901478 93.8% 7411586 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,917,345 G→A 100% G763G (GGG→GGA)  barA → hybrid sensory histidine kinase, in two‑component regulatory system with UvrY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,917,3450GA98.3% 574.7 / ‑1.3 174G763G (GGG→GGA) barAhybrid sensory histidine kinase, in two‑component regulatory system with UvrY
Reads supporting (aligned to +/- strand):  ref base G (0/3);  new base A (83/88);  total (83/91)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01

Only 100 of 174 total aligned reads displayed.

ACTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGCGTCGTG  >  NC_000913/2917249‑2917441
                                                                                                 |                                                                                                
 cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGa                                                                                              >  1:835843/1‑100 (MQ=255)
 cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGa                                                                                              >  2:269115/1‑100 (MQ=255)
 cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGa                                                                                              >  2:2577865/1‑100 (MQ=255)
  tCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAg                                                                                             >  1:1088018/1‑100 (MQ=255)
   cATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                            <  1:932982/100‑1 (MQ=255)
   cATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATAGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                            >  2:263007/1‑100 (MQ=255)
    aTCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCg                                                                                           >  1:2631560/1‑100 (MQ=255)
     tCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGa                                                                                          >  2:2124410/1‑100 (MQ=255)
      ccaccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAt                                                                                         <  1:2473855/100‑1 (MQ=255)
       caccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAtt                                                                                        <  1:1863275/100‑1 (MQ=255)
         ccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTAt                                                                                      >  2:2026890/1‑100 (MQ=255)
            acgcacGCATCAGGAAAAAACGCCGGTTATCGCGGTAA‑CGGCGCAGGTAATGGCCGGGCAAAAAGAGAAGGCGCTGGGCGCAGGAATGAGCGATTATc                                                                                     <  2:3312155/93‑1 (MQ=255)
             cTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTgg                                                                                  <  1:1832990/100‑1 (MQ=255)
              tCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGc                                                                                 <  2:1910566/100‑1 (MQ=255)
               cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGGGATTATCTGGCg                                                                                >  2:2903079/1‑100 (MQ=255)
               cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                                <  2:3377774/100‑1 (MQ=255)
               cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                                >  1:2687818/1‑100 (MQ=255)
               cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                                >  1:3154842/1‑100 (MQ=255)
               cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                                >  1:383717/1‑100 (MQ=255)
                 cGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGaa                                                                              >  1:2721866/1‑100 (MQ=255)
                   cATCAGCAACAAACGCCGGTTATGGAGGTAA‑CGGCGCATAAAAAAAACAAAAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTgg                                                                                  <  2:1138920/94‑1 (MQ=255)
                    aTCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAcc                                                                           <  2:3217236/100‑1 (MQ=255)
                      cAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTCGCGAAAcc                                                                           >  2:360726/1‑98 (MQ=255)
                       aGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGa                                                                         >  2:531090/1‑99 (MQ=255)
                       aGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAt                                                                        <  1:3438314/100‑1 (MQ=255)
                       aGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAt                                                                        >  2:1334851/1‑100 (MQ=255)
                        gCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGGGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGAtt                                                                       <  2:2186045/100‑1 (MQ=255)
                        gCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAtt                                                                       >  2:1651221/1‑100 (MQ=255)
                         caacaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTg                                                                      <  2:3411600/100‑1 (MQ=255)
                         caacaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTg                                                                      <  2:1586087/100‑1 (MQ=255)
                         caacaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTg                                                                      <  2:3169844/100‑1 (MQ=255)
                          aacaaACGCCGGTTATCGCGGTAA‑CGGCGCATGAAAAAGAAGGGAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTga                                                                     <  2:3146556/100‑1 (MQ=255)
                           acaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaa                                                                    >  2:72165/1‑100 (MQ=255)
                            gcatgcgccgTTACCGCGATAACCGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaa                                                                    >  2:1480850/10‑100 (MQ=37)
                            gcatgcgccgTTACCGCGATAACCGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaa                                                                    >  1:3377858/10‑100 (MQ=37)
                            catgcGCCGG‑TACCGCGATAACCGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGCAATGAGCGATTATCTGGCGAACCCGATTgaag                                                                   >  2:1314801/5‑100 (MQ=255)
                            caaACGCCGGTTATCGCGGTAA‑CGGCGCATGAAAAAAAAAAAAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaag                                                                   <  2:188306/100‑1 (MQ=255)
                             aaaCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaaga                                                                  >  2:668225/1‑100 (MQ=255)
                             aaaCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaaga                                                                  <  1:667105/100‑1 (MQ=255)
                               aCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGaagaag                                                                <  1:1781281/100‑1 (MQ=255)
                               aCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGaagaag                                                                <  1:3188599/100‑1 (MQ=255)
                                cGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAagaaga                                                               >  1:1674184/1‑100 (MQ=255)
                                 gCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAagag                                                              <  2:3237395/100‑1 (MQ=255)
                                  ccGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGc                                                             >  1:556393/1‑100 (MQ=255)
                                  ccGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGc                                                             <  2:3810772/100‑1 (MQ=255)
                                  ccGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGc                                                             <  2:1435817/100‑1 (MQ=255)
                                   cGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCg                                                            <  2:431863/100‑1 (MQ=255)
                                        aTCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGc                                                       >  1:3266692/1‑100 (MQ=255)
                                        aTCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGc                                                       >  1:3575745/1‑100 (MQ=255)
                                           gcgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATa                                                    >  2:631706/1‑100 (MQ=255)
                                           gcgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATa                                                    >  2:1687665/1‑100 (MQ=255)
                                           gcgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATa                                                    >  2:2908943/1‑100 (MQ=255)
                                           gcgGTAA‑CGGCGCATGCAATGGACGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAACGATTGAAGAAGAGCGATTGCATa                                                    >  2:3132097/1‑100 (MQ=255)
                                            cgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATaa                                                   >  1:2942251/1‑100 (MQ=255)
                                            cgGTAA‑CGGCGCATGCAATGGACGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGTTTATCTGGCGAAACCGATTGAAGAAGAGCGGTTGCATaa                                                   >  2:890198/1‑100 (MQ=255)
                                              gTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAAtt                                                 <  1:363352/100‑1 (MQ=255)
                                               tAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAAttt                                                <  1:191049/100‑1 (MQ=255)
                                                 a‑CGGCGCATGCAATGGCCGGGCAAAGAGAGAAGCCGCTCGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgt                                              <  2:811235/100‑1 (MQ=255)
                                                 a‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgt                                              <  2:2337507/100‑1 (MQ=255)
                                                 a‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgt                                              <  2:1816773/100‑1 (MQ=255)
                                                 a‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgt                                              <  1:2792609/100‑1 (MQ=255)
                                                   cGGCGCATGCAATGGCCGGGTAAAAAGAGAAGCTGCTTGGCGCAGGAATGTGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgtt                                             <  1:639180/100‑1 (MQ=255)
                                                    ggCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgttg                                            <  1:3374995/100‑1 (MQ=255)
                                                    ggCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgttg                                            <  2:3338179/100‑1 (MQ=255)
                                                    ggCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgttg                                            <  1:2098804/100‑1 (MQ=255)
                                                    ggCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgttg                                            <  1:1403204/100‑1 (MQ=255)
                                                        cATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTgc                                        <  2:1613294/100‑1 (MQ=255)
                                                          tgaaaatgCCGGGCGAAAAGAGAATGTGCGTGGCGCAGGAGACAGCAATTAGCTTGCGTAACCGATTGAATGAAAGCGATTGCATAATTTGTTGTTgcgc                                      <  2:115920/93‑1 (MQ=255)
                                                           gCAATGGCCGGGCAAAAAGAGAAGCTGCCTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGACTGAAGAAGAGCGATTGCATAATTTGTTGTTgcgat                                     <  1:3145448/100‑3 (MQ=255)
                                                            cAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTa                                    >  1:2027871/1‑100 (MQ=255)
                                                            cAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTa                                    <  1:133349/100‑1 (MQ=255)
                                                             aaTGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTAc                                   <  2:2699222/100‑1 (MQ=255)
                                                              ctGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACa                                  <  2:2194869/99‑1 (MQ=255)
                                                                ggCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAg                                <  1:1704430/100‑1 (MQ=255)
                                                                 gCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGc                               >  1:3071440/1‑100 (MQ=255)
                                                                  ccGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGcc                              <  2:1083566/100‑1 (MQ=255)
                                                                  ccGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGcc                              >  1:461721/1‑100 (MQ=255)
                                                                    gggCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTg                            <  2:1257953/100‑1 (MQ=255)
                                                                    gggCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTg                            >  1:1699092/1‑100 (MQ=255)
                                                                      gCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGc                          <  2:2969176/100‑1 (MQ=255)
                                                                      gCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGc                          <  2:2969057/100‑1 (MQ=255)
                                                                      gCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGc                          <  2:3575719/100‑1 (MQ=255)
                                                                       cAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCa                         >  1:1586476/1‑100 (MQ=255)
                                                                         aaaaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGc                       >  2:3770700/1‑100 (MQ=255)
                                                                          aaaGAGAAGCTGCTTGGCGAAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGc                       <  1:996779/99‑1 (MQ=255)
                                                                           aaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCgg                     <  1:1189173/100‑1 (MQ=255)
                                                                               gaAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAtt                 <  2:2932849/100‑1 (MQ=255)
                                                                                aaGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAttt                <  1:3726526/100‑1 (MQ=255)
                                                                                aaGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAttt                >  1:2482129/1‑100 (MQ=255)
                                                                                aaGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAttt                <  2:3081468/100‑1 (MQ=255)
                                                                                 aGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTc               <  1:921638/100‑1 (MQ=255)
                                                                                  gctgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTcc              >  1:3411213/1‑100 (MQ=255)
                                                                                  gctgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTcc              <  1:2919528/100‑1 (MQ=255)
                                                                                   ctgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCct             <  2:1840295/100‑1 (MQ=255)
                                                                                    tgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGTGGTATTTCctc            >  2:3929934/1‑100 (MQ=255)
                                                                                    tgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCctc            <  1:953282/100‑1 (MQ=255)
                                                                                     gctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCctct           >  1:128757/1‑100 (MQ=255)
                                                                                         ggCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTcgcg       <  1:728986/100‑1 (MQ=255)
                                                                                         ggCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTcgcg       >  2:2581767/1‑100 (MQ=255)
                                                                                              aGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGCGTCGTg  <  2:1088011/100‑1 (MQ=255)
                                                                                                 |                                                                                                
ACTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGCGTCGTG  >  NC_000913/2917249‑2917441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A