Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F52 I0 R1 129 152.3 7640533 93.0% 7105695 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,917,345 G→A 100% G763G (GGG→GGA)  barA → hybrid sensory histidine kinase, in two‑component regulatory system with UvrY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,917,3450GA99.2% 478.4 / ‑4.4 144G763G (GGG→GGA) barAhybrid sensory histidine kinase, in two‑component regulatory system with UvrY
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base A (74/68);  total (75/69)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 144 total aligned reads displayed.

AACTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGCGTCGT  >  NC_000913/2917248‑2917440
                                                                                                  |                                                                                               
aaCTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAAt                                                                                               >  2:2996907/1‑100 (MQ=255)
 aCTCAACCACCAACTCCCGCACCAGCAACAAAAGCCGGTTATCGCGGTAA‑CGGCGTATGCAAAAAAAAAAAAAAAAGAGAAGCTGCTTGGCGCAGGAATg                                                                                              <  1:2779508/100‑1 (MQ=255)
  cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATg                                                                                              >  1:1537329/1‑99 (MQ=255)
  cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGa                                                                                             >  1:1823166/1‑100 (MQ=255)
  cTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGa                                                                                             >  2:2659184/1‑100 (MQ=255)
   tCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAg                                                                                            >  1:1434791/1‑100 (MQ=255)
    cATCGACCAACTCCCGCAGCAGCAACAAACGCCGGTTATCGGGGGAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                           <  1:1709786/100‑1 (MQ=255)
    cATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                           >  2:3366127/1‑100 (MQ=255)
    cATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                           >  2:3320885/1‑100 (MQ=255)
    cATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGc                                                                                           <  2:3010436/100‑1 (MQ=255)
     aTCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCg                                                                                          <  2:3101246/100‑1 (MQ=255)
     aTCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCg                                                                                          >  2:709655/1‑100 (MQ=255)
      tCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGa                                                                                         >  2:2294117/1‑100 (MQ=255)
       ccaccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAt                                                                                        >  2:1590277/1‑100 (MQ=255)
       ccaccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAt                                                                                        >  1:2393987/1‑100 (MQ=255)
        caccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAtt                                                                                       <  1:1424826/100‑1 (MQ=255)
        caccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAtt                                                                                       >  2:2467459/1‑100 (MQ=255)
        caccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGAtt                                                                                       <  2:2603675/100‑1 (MQ=255)
          ccaACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTAt                                                                                     >  2:632029/1‑100 (MQ=255)
            aaCTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCt                                                                                   >  1:3406268/1‑100 (MQ=255)
              cTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTg                                                                                  >  1:921555/1‑99 (MQ=255)
               tCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGc                                                                                <  2:3657764/100‑1 (MQ=255)
                cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                               >  2:2820799/1‑100 (MQ=255)
                cccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCg                                                                               >  2:3373652/1‑100 (MQ=255)
                 ccGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGa                                                                              >  1:597491/1‑100 (MQ=255)
                  cgaaTCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGAAAAAAAAAAAAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGaa                                                                             <  1:1923101/97‑1 (MQ=255)
                  cGCATCAGGAACAAACGACGGTTATCGCGGTAA‑CGGCGCAGGCAATGGCCGGGCAAAAAGAGAAGCTGGTTGGCGAAGGGATGAGCGATTATCTGGAGaa                                                                             >  1:782937/1‑100 (MQ=255)
                    cATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAc                                                                           <  1:2820785/100‑1 (MQ=255)
                     aTCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAc                                                                           <  1:3205708/99‑1 (MQ=255)
                     aTCAGCAACAAACGCCGGTTATAGCGGTAA‑CGGCGCATGAAAAAAAAAAAAAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAc                                                                           <  1:1474420/99‑1 (MQ=255)
                        aGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAt                                                                       >  1:660473/1‑100 (MQ=255)
                         gCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAtt                                                                      <  2:3797767/100‑1 (MQ=255)
                         gCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGAtt                                                                      >  1:625783/1‑100 (MQ=255)
                          caacaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTg                                                                     <  2:2123205/100‑1 (MQ=255)
                            acaaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGTCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTga                                                                    <  1:3267363/99‑1 (MQ=255)
                             caaACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaag                                                                  >  1:3590595/1‑100 (MQ=255)
                              catgcgccgTTACCGCGATAACCGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaag                                                                  >  1:2232050/9‑100 (MQ=37)
                              aaaCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaaga                                                                 >  1:2974112/1‑100 (MQ=255)
                              aaaCGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTgaaga                                                                 >  1:1981941/1‑100 (MQ=255)
                                  gCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAagag                                                             <  2:937874/100‑1 (MQ=255)
                                   ccGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGc                                                            >  2:1231791/1‑100 (MQ=255)
                                   ccGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGc                                                            <  1:2102076/100‑1 (MQ=255)
                                    cGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGCGCGATTATCTGGCGAACCCGATTGAAGAAGAGc                                                            <  1:3038679/99‑1 (MQ=255)
                                     ggTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAAAGAGCGCTTATCTGGTGAAACCGATTGAAGAAGAGCGa                                                          >  1:2568035/1‑100 (MQ=255)
                                      gTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGAt                                                         >  1:2580389/1‑100 (MQ=255)
                                        tATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAATAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTg                                                       <  2:1120995/100‑1 (MQ=255)
                                         aTCGCGGTAA‑CGGCGCATGTAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGc                                                      <  2:2687855/100‑1 (MQ=255)
                                         aTCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGc                                                      >  1:2643076/1‑100 (MQ=255)
                                           cgcgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCAt                                                    >  2:17794/1‑100 (MQ=255)
                                             cgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATaa                                                  <  2:1586838/100‑1 (MQ=255)
                                             cgGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATaa                                                  >  1:1091654/1‑100 (MQ=255)
                                               gTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAAtt                                                >  1:37476/1‑100 (MQ=255)
                                                  a‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgt                                             <  2:2351492/100‑1 (MQ=255)
                                                    cGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgtt                                            <  2:1685376/100‑1 (MQ=255)
                                                    cGGCGCATGCAAGGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgtt                                            <  1:3566548/100‑1 (MQ=255)
                                                       cgcATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATttgttgtn                                         <  1:1023115/100‑2 (MQ=255)
                                                         cATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTgc                                       <  1:1982311/100‑1 (MQ=255)
                                                         cATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTgc                                       >  1:3652291/1‑100 (MQ=255)
                                                          atacaaggaccGGACAAAGAGAGAATTCGCGTGACGCAGCAATGATCGATTATCTGTCGATACCGCTTCAAGTATAGCGATTGCATAATttgctgt                                          <  1:3582579/87‑1 (MQ=255)
                                                          aTGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTgcg                                      <  1:3366107/100‑1 (MQ=255)
                                                            gCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCt                                    >  2:1670283/1‑100 (MQ=255)
                                                            gCAATGGCCGGGCAAAAAGAGAAGCTACTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCt                                    >  1:2257494/1‑100 (MQ=255)
                                                             cAATGGCCGGGCAAAAAGAGAAGCTTCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTgcgc                                     <  1:3541339/98‑1 (MQ=255)
                                                             cAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTa                                   <  1:1234691/100‑1 (MQ=255)
                                                             cAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTa                                   >  2:1863186/1‑100 (MQ=255)
                                                               aTGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACa                                 >  2:25597/1‑100 (MQ=255)
                                                                  gCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGc                              >  1:2378343/1‑100 (MQ=255)
                                                                   ccGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGcc                             >  1:182575/1‑100 (MQ=255)
                                                                    cGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCt                            >  2:890320/1‑100 (MQ=255)
                                                                    cGGGCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCt                            >  2:2362504/1‑100 (MQ=255)
                                                                     gggCAAAAAGAGAAGCTGCTTGGGGGAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGcc                             <  1:812285/98‑1 (MQ=255)
                                                                     gggCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTg                           <  1:397667/100‑1 (MQ=255)
                                                                     gggCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTg                           >  2:3547072/1‑100 (MQ=255)
                                                                      ggCAAAAAGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTgg                          <  2:1432959/100‑1 (MQ=255)
                                                                         aaagaGCGAAGCTGCTTTGCGCAGGAATGAGCGATTGGCTGGCGAAACCGATTGAAGAAGAGCGATTTGATGATCTGTTGTTGCGCTACCAGGCGGGCAg                       >  1:3018915/1‑100 (MQ=255)
                                                                         aaaaaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAg                       >  2:1869152/1‑100 (MQ=255)
                                                                          aaaaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGc                      <  2:2006151/100‑1 (MQ=255)
                                                                          aaaaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGc                      >  1:1783035/1‑100 (MQ=255)
                                                                          aaaaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAAACGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGGTACAAGCCTGGCAg                       >  1:932706/1‑99 (MQ=255)
                                                                            aaGAGAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCgg                    <  2:3590617/100‑1 (MQ=255)
                                                                             agagAAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGt                   <  2:2129685/100‑1 (MQ=255)
                                                                              gagaAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCgg                    <  1:2310236/98‑1 (MQ=255)
                                                                              gagaAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTa                  <  1:3424277/100‑1 (MQ=255)
                                                                                gaAGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAtt                <  2:1844441/100‑1 (MQ=255)
                                                                                 aaGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTAttt               <  1:3056475/100‑1 (MQ=255)
                                                                                  aGCTGCTTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTc              >  1:2069287/1‑100 (MQ=255)
                                                                                   gctgctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTcc             <  2:2947716/100‑1 (MQ=255)
                                                                                      gctTGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCctct          >  2:3470793/1‑100 (MQ=255)
                                                                                        ttGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTcg        <  2:2277041/100‑1 (MQ=255)
                                                                                        ttGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTcg        <  1:890313/100‑1 (MQ=255)
                                                                                        ttGGCGCAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTcg        <  2:1600876/100‑1 (MQ=255)
                                                                                           gcgcAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgt     <  1:1863177/100‑1 (MQ=255)
                                                                                            cgcAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtc    >  1:2845713/1‑100 (MQ=255)
                                                                                            cgcAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtc    >  1:2488710/1‑100 (MQ=255)
                                                                                            cgcAGGAATGAGCGATTATCTGGCGAAACCGATGGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtc    >  1:2294522/1‑100 (MQ=255)
                                                                                             gcAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtcg   <  2:1981951/100‑1 (MQ=255)
                                                                                             gcAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtcg   <  1:147451/100‑1 (MQ=255)
                                                                                              cAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtcgt  >  2:2417866/1‑100 (MQ=255)
                                                                                              cAGGAATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtcgt  >  1:960289/1‑100 (MQ=255)
                                                                                              cAGGAATGAGCGATTAGCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGcgtcgt  <  1:3373632/100‑1 (MQ=255)
                                                                                                  |                                                                                               
AACTCATCCACCAACTCCCGCATCAGCAACAAACGCCGGTTATCGCGGTAA‑CGGCGCATGCAATGGCCGGGCAAAAAGAGAAGCTGCTTGGCGCAGGGATGAGCGATTATCTGGCGAAACCGATTGAAGAAGAGCGATTGCATAATTTGTTGTTGCGCTACAAGCCTGGCAGCGGTATTTCCTCTCGCGTCGT  >  NC_000913/2917248‑2917440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A