Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A16 F125 I1 R1 17 96.7 4814547 93.9% 4520859 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,215,179 Δ4 bp coding (900‑903/930 nt) metA → homoserine O‑transsuccinylase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4215179 4215182 4 101 [0] [0] 103 metA homoserine O‑transsuccinylase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42151780 (0.000)100 (1.050) 73/196 0.1 100% coding (899/930 nt) metA homoserine O‑transsuccinylase
?NC_000913 4215183 = 0 (0.000)coding (904/930 nt) metA homoserine O‑transsuccinylase

GATK/CNVnator alignment

N/A