Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A15 F55 I1 R1 17 86.9 4617929 88.1% 4068395 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,121,521 Δ9 bp coding (219‑227/1332 nt) hslU ← molecular chaperone and ATPase component of HslUV protease

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4121521 4121529 9 59 [0] [0] 60 hslU molecular chaperone and ATPase component of HslUV protease

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41215200 (0.000)57 (0.670) 48/196 1.0 100% coding (228/1332 nt) hslU molecular chaperone and ATPase component of HslUV protease
?NC_000913 4121530 = 0 (0.000)coding (218/1332 nt) hslU molecular chaperone and ATPase component of HslUV protease

GATK/CNVnator alignment

N/A