Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F113 I1 R1
|
18 |
155.0 |
7745081 |
93.4% |
7233905 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,248,432 |
(G)5→6 |
coding (660/663 nt) |
yqjA → |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,248,427 | 1 | . | G | 99.3%
| 531.4
/ ‑2.8
| 143 | coding (655/663 nt) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (85/57); total (85/58) |
| Fisher's exact test for biased strand distribution p-value = 4.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
Only 100 of 153 total aligned reads displayed.
GACCAGCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑GGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTG > NC_000913/3248328‑3248521
|
gACCAGCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATc < 1:235193/100‑1 (MQ=255)
aCCAGCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑g > 2:3016546/1‑100 (MQ=255)
aacTGATGTCATGACTGATGCTGCTCCCGGTAGTGCTGCTGGGGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑gggg > 1:2610326/3‑100 (MQ=255)
aGCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑gggg < 1:1536499/100‑1 (MQ=255)
aGCTGATGTCATGCCTGATGCAGCTCCCGGTGGTGCTGCTGGTGGTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑gggg < 1:178967/100‑1 (MQ=255)
gCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATAGGGAAATC‑ggggg < 1:2535088/100‑1 (MQ=255)
gTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGACTGGCAGGTTCTCTGGTCGTGTTATGAAAAAAGAAATATGGAAATCGGGGGGTAAgg < 2:112407/100‑1 (MQ=255)
tCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAggg < 1:1338336/100‑1 (MQ=255)
tCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAggg > 2:272544/1‑100 (MQ=255)
cATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGa > 2:3786163/1‑100 (MQ=255)
cATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGa > 2:119558/1‑100 (MQ=255)
aTGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTGTGGCCTGGCAGGTGCTCTGGTCGTGTTATTGAAAAAGAAATATGGAAATCGGGGGGTAAggg < 2:949291/98‑1 (MQ=255)
tGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATg < 2:2450754/100‑1 (MQ=255)
gCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGc > 1:435569/1‑100 (MQ=255)
ccTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCa > 2:2854496/1‑100 (MQ=255)
ccTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCa < 1:74422/100‑1 (MQ=255)
ccTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCa > 2:958990/1‑100 (MQ=255)
tGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCaaa > 2:3841376/1‑100 (MQ=255)
gATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAAt > 2:983025/1‑100 (MQ=255)
aTGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATa < 1:3787276/100‑1 (MQ=255)
gctgctCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATAcc < 1:3301606/100‑1 (MQ=255)
tgctCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTc > 1:697404/1‑100 (MQ=255)
gtcacagtggtgCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGc > 1:3689042/7‑100 (MQ=255)
ctCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATTCAAATACCTCGc < 1:2547301/100‑1 (MQ=255)
ctCCCGGTGGTGATGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTCTGGCAAAAGAAATATGGCAATCGGGGGGTAAGGGATGCAAATACCTCGc > 2:1735084/1‑100 (MQ=255)
tCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGACGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCa < 2:2722366/100‑1 (MQ=255)
ccGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATg > 2:569908/1‑100 (MQ=255)
ggtggtGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTc > 2:1625310/1‑100 (MQ=255)
ggtggtGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTc > 1:1180759/1‑100 (MQ=255)
gtggtgCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCg < 1:3007967/100‑1 (MQ=255)
tggtgCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGc < 1:133211/100‑1 (MQ=255)
tgctgcTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCagatcggaag > 2:510681/1‑91 (MQ=255)
gctgctGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCg > 2:3090416/1‑100 (MQ=255)
tgctgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGcc > 2:3502448/1‑100 (MQ=255)
tgattgtgtTTGTACTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCg < 2:203129/93‑1 (MQ=255)
gctgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGcc > 2:1069102/1‑99 (MQ=255)
gctgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCa < 1:3500910/100‑1 (MQ=255)
gctgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCa > 1:711969/1‑100 (MQ=255)
gctgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCa < 2:1529153/100‑1 (MQ=255)
tgGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGc < 1:2880109/100‑1 (MQ=255)
ggTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCt > 1:2832689/1‑100 (MQ=255)
gtgtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTa < 1:857337/100‑1 (MQ=255)
tgtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAg > 1:526131/1‑100 (MQ=255)
gtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGc > 1:2219578/1‑100 (MQ=255)
gtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGc > 1:2473071/1‑100 (MQ=255)
gtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGc > 2:3313849/1‑100 (MQ=255)
gtTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGc > 2:2224752/1‑100 (MQ=255)
ttGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTACCCt < 1:694966/100‑1 (MQ=255)
tGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTg > 2:2903845/1‑100 (MQ=255)
ggCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTgg > 1:3159067/1‑100 (MQ=255)
ccTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTc > 1:398238/1‑100 (MQ=255)
ccTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTc > 2:1175131/1‑100 (MQ=255)
cTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTcc > 1:2593644/1‑100 (MQ=255)
cTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTc < 2:503955/99‑1 (MQ=255)
tGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCg > 1:336670/1‑100 (MQ=255)
gCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGgc > 1:2494532/1‑100 (MQ=255)
gCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGgc < 1:2500545/100‑1 (MQ=255)
aGGTTCTCTGGGCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGgc < 2:3291197/98‑1 (MQ=255)
aGGTGCTCTGGTCGTGTTATGGGAAAAGAAATATGGAACTCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGgc < 2:3291059/98‑1 (MQ=255)
ggTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCt > 1:2044052/1‑100 (MQ=255)
gTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTg < 2:2189901/100‑1 (MQ=255)
ctctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGttt < 2:398237/100‑1 (MQ=255)
ctctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGttt < 1:2321013/100‑1 (MQ=255)
ctctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGt > 2:1101902/1‑98 (MQ=255)
tctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGtttt > 1:2019856/1‑100 (MQ=255)
ctGGTCGTGTTGTGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTa > 1:3684211/1‑100 (MQ=255)
ctGGTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTa > 2:749405/1‑100 (MQ=255)
ggTCGTGTGATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACt > 2:1417208/1‑100 (MQ=255)
gTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACtt > 1:2686863/1‑100 (MQ=255)
gTCGTGTTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACtt < 2:2686848/100‑1 (MQ=255)
gtgtTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTg < 1:1940649/100‑1 (MQ=255)
tgtTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTgg > 1:1675325/1‑100 (MQ=255)
tgtTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTgg > 2:2469424/1‑100 (MQ=255)
gtTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGt > 2:236806/1‑100 (MQ=255)
gtTATGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGt > 2:1760500/1‑100 (MQ=255)
aTGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCgg < 2:2017658/100‑1 (MQ=255)
aTGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCgg < 2:697403/100‑1 (MQ=255)
aTGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCgg < 1:2392699/100‑1 (MQ=255)
tGGAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGc > 1:2466188/1‑100 (MQ=255)
ggAAAAAGAAATATGGCAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTTGTCGGCa < 2:2645577/100‑1 (MQ=255)
ggAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCg > 2:3394564/1‑97 (MQ=255)
ggAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCa > 1:2197574/1‑100 (MQ=255)
ggAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCa > 2:1504790/1‑100 (MQ=255)
gAAAAAGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCAc > 1:548770/1‑100 (MQ=255)
aaaaGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGc > 2:3038337/1‑100 (MQ=255)
aaaGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCt < 1:1488114/100‑1 (MQ=255)
aGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGt > 2:3404620/1‑100 (MQ=255)
aGAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGt > 2:1040001/1‑100 (MQ=255)
gAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGtt < 1:1043748/100‑1 (MQ=255)
gAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGtt > 1:2881482/1‑100 (MQ=255)
gAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGtt < 1:2903860/100‑1 (MQ=255)
gAAATATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGtt > 2:2551931/1‑100 (MQ=255)
aaaTATGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTg < 1:3175083/100‑1 (MQ=255)
tatGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTg < 1:3797952/100‑1 (MQ=255)
atGGAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCTAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTgg > 2:255954/1‑100 (MQ=255)
ggAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGcc > 2:589754/1‑100 (MQ=255)
gAAATCGGGGGGTAAGGGATGCAAATATCTCGCATGTCTCGTCGCGAGCGAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCt > 2:318717/1‑100 (MQ=255)
gAAATCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCt > 1:898333/1‑100 (MQ=255)
aaaTCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTg > 1:1805568/1‑100 (MQ=255)
aaaTCGGGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTg > 2:1057190/1‑100 (MQ=255)
|
GACCAGCTGATGTCATGCCTGATGCTGCTCCCGGTGGTGCTGCTGGTGTTTGGCCTGGCAGGTTCTCTGGTCGTGTTATGGAAAAAGAAATATGGAAATC‑GGGGGTAAGGGATGCAAATACCTCGCATGTCGCTTCGCCAGCTAGCCTGGTCCGGCGCTGTTTTACTTCTGGTCGGCACGCTGTTGCTGGCCTG > NC_000913/3248328‑3248521
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
