Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,951,559:1 |
+A |
28.8% |
pseudogene (18/663 nt) |
ilvG → |
pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,951,559 | 1 | . | A | 28.8%
| 309.5
/ 241.5
| 184 | pseudogene (18/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| Reads supporting (aligned to +/- strand): ref base . (76/55); new base A (26/27); total (102/82) |
| Fisher's exact test for biased strand distribution p-value = 3.26e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 197 total aligned reads displayed.
AACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCG > NC_000913/3951460‑3951658
|
aCAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGTAACACTgc‑g > 1:826266/1‑100 (MQ=255)
cAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTgc‑gc < 1:1703990/100‑1 (MQ=255)
gCTGCGCCAGGCACATGTGGCATTACAAGGTGATTTACATGCTCTGTTACCAGCATTACAGCAGCAGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCa > 1:1369125/1‑100 (MQ=255)
tGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGc < 2:447576/100‑1 (MQ=255)
gCGTCGGGGACATGTGGCAGTACAATGTGATGTAAATGCTCTGGGACCAGCATTACAGCAGCCGGTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCt > 1:3680410/1‑100 (MQ=255)
gCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCt > 1:50578/1‑100 (MQ=255)
gTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTg < 2:2141009/100‑1 (MQ=255)
tCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGc > 1:4257349/1‑100 (MQ=255)
cAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTCGCAGCAACACTGC‑GCGCAGCTGCGt > 1:1450878/1‑100 (MQ=255)
ggCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGtg < 2:3330253/100‑1 (MQ=255)
ggCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtga > 2:3278255/1‑100 (MQ=255)
ggCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtga > 2:3562017/1‑100 (MQ=255)
cacaTTTTGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtgatg < 1:4133457/100‑1 (MQ=255)
cacaTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtgatg > 2:2082036/1‑100 (MQ=255)
cacaTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtgatg > 2:3799347/1‑100 (MQ=255)
acaTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGtgatg < 2:4115549/100‑1 (MQ=255)
acaTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtgatga < 2:2514773/100‑1 (MQ=255)
caTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGaa < 1:2453167/100‑1 (MQ=255)
tgtgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGaaga > 1:872217/1‑98 (MQ=255)
tgtgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACa < 1:3278237/100‑1 (MQ=255)
tgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACAt > 1:1749144/1‑100 (MQ=255)
tgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACAtt > 2:1543375/1‑100 (MQ=255)
ggCATTACAAGGTTATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACAtt < 2:2188207/100‑1 (MQ=255)
cATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCt > 1:19527/1‑100 (MQ=255)
aTTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTg < 2:2233131/100‑1 (MQ=255)
aTTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTg < 2:3262934/100‑1 (MQ=255)
tACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTgg > 2:320382/1‑100 (MQ=255)
tACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTccagat > 2:1713182/1‑96 (MQ=255)
tACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGc > 1:1614203/1‑100 (MQ=255)
aCAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGc < 2:434312/100‑1 (MQ=255)
aCAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCg < 1:2762628/100‑1 (MQ=255)
cAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCg < 2:1808415/100‑1 (MQ=255)
aGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTa < 1:718107/100‑1 (MQ=255)
ggTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTAc > 2:3938103/1‑100 (MQ=255)
gTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACg < 1:3084134/100‑1 (MQ=255)
tGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGa > 1:2028894/1‑100 (MQ=255)
aTTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAcc > 1:3963935/1‑100 (MQ=255)
tGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCACAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCgg < 2:3355240/100‑1 (MQ=255)
gCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GGGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGt > 2:1761569/1‑100 (MQ=255)
gCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGt < 2:427191/100‑1 (MQ=255)
tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGt < 1:1879275/99‑1 (MQ=255)
ctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGAc > 1:2060044/1‑100 (MQ=255)
ctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGAc > 2:4060813/1‑100 (MQ=255)
ctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGAc < 1:519840/100‑1 (MQ=255)
aCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGCCGCGAt > 1:1764571/1‑100 (MQ=255)
cAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCTTGGCGTTACGACCATCCCGGTGACGCTATCt > 2:2777955/1‑100 (MQ=255)
cATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAc > 2:1151351/1‑100 (MQ=255)
aCAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGcc > 1:3214551/1‑100 (MQ=255)
cagcagCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCg > 1:925913/1‑100 (MQ=255)
agcagcCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCg > 2:1013610/1‑100 (MQ=255)
agcagcCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgt < 2:3220697/100‑1 (MQ=255)
gcagcCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgt < 2:3478796/100‑1 (MQ=255)
gcagcCGTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgt < 2:4257381/100‑1 (MQ=255)
agcCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgt > 2:2281969/1‑100 (MQ=255)
tctgTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgt < 2:1233405/97‑1 (MQ=255)
gcCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgtt < 2:501116/100‑1 (MQ=255)
gcCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgtt < 2:3424127/100‑1 (MQ=255)
cGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGCTGAACATTCCTGGCGATACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt > 2:526500/1‑100 (MQ=255)
cGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt < 2:1694690/100‑1 (MQ=255)
cGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt < 1:3799320/100‑1 (MQ=255)
gTTAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt > 2:2803781/1‑100 (MQ=255)
gTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgtt < 2:2060051/100‑1 (MQ=255)
gTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgtt > 2:884950/1‑100 (MQ=255)
gTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgtt < 2:4383125/100‑1 (MQ=255)
ttAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa < 2:4362813/100‑1 (MQ=255)
tAAATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa > 2:3992418/1‑100 (MQ=255)
aaaTCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa > 2:1924347/1‑100 (MQ=255)
aaaTCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa > 2:64723/1‑100 (MQ=255)
aaTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa > 2:2036847/1‑100 (MQ=255)
aaTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa > 1:1100082/1‑100 (MQ=255)
aaTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACCCTATCTACGCGCCGTTGTTGTTaaaa > 2:2669377/1‑100 (MQ=255)
aTCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaa < 1:1029857/99‑1 (MQ=255)
aTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac < 2:3913909/100‑1 (MQ=255)
aTCAATGACTGGCAGCAACACTGC‑GCGCACCTGCGTGATGAACCATCCTGGCCTTACGACCATCCCGCTGACGCCATCTACGCGCCGTTGTTGTTAacac > 1:3039844/1‑100 (MQ=255)
cAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaacaa > 2:4385959/1‑100 (MQ=255)
aaTGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaacaac > 1:2931046/1‑100 (MQ=255)
tGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTg < 2:4375640/100‑1 (MQ=255)
tGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTg > 2:1458869/1‑100 (MQ=255)
tGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTg < 1:3246919/100‑1 (MQ=255)
aCTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTc > 1:2371449/1‑100 (MQ=255)
aCTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTc < 2:830735/100‑1 (MQ=255)
cTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg > 2:3198643/1‑100 (MQ=255)
cTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg < 1:3888355/100‑1 (MQ=255)
cTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg < 1:1785440/100‑1 (MQ=255)
tGGCAGAAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg < 1:1082584/100‑1 (MQ=255)
ggCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGa > 2:365070/1‑100 (MQ=255)
cagcaACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATc > 2:2911741/1‑100 (MQ=255)
cagcaACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATc > 2:1605524/1‑100 (MQ=255)
agcaACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATc < 1:209385/100‑1 (MQ=255)
gcaACACTGC‑GCGCAGCTGCGTGATGAACACTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAACACAACTGTCGGATCGt > 1:3481641/1‑100 (MQ=255)
caACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTa < 2:349525/100‑1 (MQ=255)
caACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTa > 2:2259126/1‑100 (MQ=255)
aaCACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaa < 1:2129879/100‑1 (MQ=255)
acacTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaa < 2:1701347/100‑1 (MQ=255)
cacTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGATGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaaa > 2:409667/1‑100 (MQ=255)
acTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGTTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAAcc > 2:90917/1‑100 (MQ=255)
cTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCt > 2:3142315/1‑100 (MQ=255)
gc‑gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGc < 2:243014/100‑1 (MQ=255)
c‑gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg < 2:3713624/100‑1 (MQ=255)
c‑gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg > 1:3564882/1‑100 (MQ=255)
|
AACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCG > NC_000913/3951460‑3951658
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
