Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F255 I0 R1
|
121 |
91.8 |
4500463 |
95.1% |
4279940 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,951,559:1 |
+A |
55.6% |
pseudogene (18/663 nt) |
ilvG → |
pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,951,559 | 1 | . | A | 55.6%
| 157.7
/ 140.5
| 81 | pseudogene (18/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| Reads supporting (aligned to +/- strand): ref base . (21/15); new base A (28/17); total (49/32) |
| Fisher's exact test for biased strand distribution p-value = 8.20e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 |
AACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCGTAAACC > NC_000913/3951460‑3951654
|
aaCAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgc < 2:173025/100‑1 (MQ=255)
aCAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgca > 2:1406785/1‑99 (MQ=255)
cAAGCTGCGTCAGGTACAGGTGGTATTACAATGTGATTTAAATGCTCTGTTACCAGCATTTCATCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcag < 2:1900709/100‑3 (MQ=255)
cAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcag < 1:664951/100‑3 (MQ=255)
cAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcag < 1:2028301/100‑3 (MQ=255)
cAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcag < 2:1488099/100‑3 (MQ=255)
aGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcagcg < 1:695651/100‑5 (MQ=255)
aGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTgcagcg > 2:346691/1‑96 (MQ=255)
gCTGCGTCAGGCACATGTGGCATTACAGGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATATCGATGACTGGCAGCAACACTgc‑g > 2:161405/1‑98 (MQ=255)
tCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCg > 2:275032/1‑100 (MQ=255)
tCAGGCACATGTGCCATTACAAGGTGATTTACATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGc > 1:387666/1‑100 (MQ=255)
cAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGt > 2:409644/1‑100 (MQ=255)
cAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGt > 2:2161595/1‑100 (MQ=255)
aGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGtg < 2:1663311/100‑1 (MQ=255)
caTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGtgatga < 1:971708/100‑1 (MQ=255)
aTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGaa > 1:1945485/1‑100 (MQ=255)
aTGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGaa < 2:1851107/100‑1 (MQ=255)
gtgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACa > 2:1328704/1‑100 (MQ=255)
gtgGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACa > 1:295539/1‑100 (MQ=255)
ggCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACAt < 2:796429/99‑1 (MQ=255)
gCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCCATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTc > 2:52149/1‑100 (MQ=255)
cATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTcc < 1:1737184/100‑1 (MQ=255)
cATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCt > 1:866096/1‑100 (MQ=255)
cATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCt > 2:873588/1‑100 (MQ=255)
tACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTgg > 2:2038444/1‑100 (MQ=255)
cAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCg > 2:847830/1‑100 (MQ=255)
cAAGGTGAGTTAAATGCTCTGTTACCAGCATTACAGCAGCCGGTAA‑‑ATCAATGACTGGCAGCAACACGGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGt < 2:1068834/100‑1 (MQ=255)
ggTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTa > 2:2236311/1‑100 (MQ=255)
ggTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTCGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTAc > 2:734366/1‑100 (MQ=255)
gATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGa > 2:1774849/1‑100 (MQ=255)
aTTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAc < 2:1945472/100‑1 (MQ=255)
aTTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAcc > 2:823123/1‑100 (MQ=255)
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGAcc < 1:1869315/100‑1 (MQ=255)
ttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCa < 1:1623963/100‑1 (MQ=255)
tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCAt > 1:1489877/1‑100 (MQ=255)
tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATc > 1:56091/1‑100 (MQ=255)
aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATcc < 2:130862/100‑1 (MQ=255)
aTGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATccc > 2:1443385/1‑100 (MQ=255)
aTGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCg < 1:1647535/100‑1 (MQ=255)
tGCTCTGTTACCAGCAGTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATccc < 2:805958/99‑1 (MQ=255)
gCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCgg < 2:627719/100‑1 (MQ=255)
ctGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGa > 1:1824229/1‑100 (MQ=255)
tACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCt > 1:2077657/1‑100 (MQ=255)
aCCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTa > 1:294737/1‑100 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTAt > 1:88764/1‑100 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTAt < 2:188877/100‑1 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTAt > 1:1671696/1‑100 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTAt > 1:958853/1‑100 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTAt > 1:1188663/1‑99 (MQ=255)
ccAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATc > 2:1085631/1‑100 (MQ=255)
aGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTa < 1:173933/100‑1 (MQ=255)
cATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAc > 1:578209/1‑100 (MQ=255)
cATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAc < 2:323339/100‑1 (MQ=255)
aTTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAcgc < 2:866095/100‑1 (MQ=255)
ttACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAcgcg < 1:1622445/100‑1 (MQ=255)
ttACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTAcgcg > 2:491973/1‑100 (MQ=255)
aCAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACgcgc > 2:11757/1‑100 (MQ=255)
aCAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGcc > 1:1160713/1‑100 (MQ=255)
aCAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGcc < 1:409643/100‑1 (MQ=255)
cagcagCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGcc > 2:504303/1‑100 (MQ=255)
gcagcCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgt > 2:536984/1‑100 (MQ=255)
agcCGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttg > 2:530354/1‑100 (MQ=255)
ccGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttg > 2:483921/1‑100 (MQ=255)
ccGTCAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttg < 1:427658/100‑1 (MQ=255)
ngTTAA‑‑ATCAATGACTGGCAGCACCACTGCAGCGCAGCTGGGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCCCCgttgtcg > 2:203717/2‑98 (MQ=255)
cGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTCCGCGCCgttgttg > 1:1300695/1‑100 (MQ=255)
cGTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttg < 1:121003/100‑1 (MQ=255)
gTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt < 2:685795/100‑1 (MQ=255)
gTTAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgt < 1:1415076/100‑1 (MQ=255)
gTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCgttgttgtt > 2:2197381/1‑100 (MQ=255)
ttAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa < 1:791423/100‑1 (MQ=255)
ttAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa < 1:1076612/100‑1 (MQ=255)
ttAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa < 2:56091/100‑1 (MQ=255)
tAA‑‑ATCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTa < 1:86281/100‑1 (MQ=255)
tAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTaa > 2:1413823/1‑100 (MQ=255)
aTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑aac < 1:646135/100‑1 (MQ=255)
aTCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑aac > 1:1792475/1‑100 (MQ=255)
tCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑aac > 1:475360/1‑100 (MQ=255)
tCAATGACTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCCATCTACGCGCCGTTGTTGTTAA‑aac < 1:373477/100‑1 (MQ=255)
cAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑aacaa > 1:783889/1‑100 (MQ=255)
aCTGGTAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGTCGTTACGACCATCCCGGTGACGCTATCTACGCTCCGTTGTT‑TTaacaacaacggcg < 2:1062785/100‑5 (MQ=255)
aCTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGt > 2:2247213/1‑100 (MQ=255)
cTGGCAGCAACACTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTc > 1:348686/1‑100 (MQ=255)
cTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCg > 2:1405182/1‑100 (MQ=255)
cTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCg > 2:20112/1‑100 (MQ=255)
agcaACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCg < 2:1641203/100‑1 (MQ=255)
gcaACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCGt > 1:1935843/1‑100 (MQ=255)
cacTGCAGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGATGTTAA‑AACAACTGTCGAATCGt > 2:1725264/1‑97 (MQ=255)
acTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCGTAAAcc < 1:1254366/100‑1 (MQ=255)
acTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCGTAAAcc > 2:1729535/1‑100 (MQ=255)
|
AACAAGCTGCGTCAGGCACATGTGGCATTACAAGGTGATTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAA‑‑ATCAATGACTGGCAGCAACACTGC‑GCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACCATCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAA‑AACAACTGTCGGATCGTAAACC > NC_000913/3951460‑3951654
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
