Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F200 I0 R1
|
101 |
105.4 |
5209919 |
94.4% |
4918163 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
35.7% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 35.7%
| 231.7
/ 198.3
| 164 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (49/56); new base G (52/6); total (102/62) |
| Fisher's exact test for biased strand distribution p-value = 3.07e-08 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.93e-01 |
Only 100 of 169 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
|
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:941565/100‑1 (MQ=255)
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:1041646/100‑1 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:771350/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 2:1116630/99‑1 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:1062191/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:2386999/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 2:1022773/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:1707948/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1216467/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:2325448/100‑2 (MQ=37)
aTGGCGCTGCACGGAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1513386/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt > 1:698259/1‑100 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2298309/100‑3 (MQ=37)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATaaa < 1:1607919/100‑3 (MQ=25)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAAt < 2:1007152/100‑1 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGt > 2:876076/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:757397/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 2:379741/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCa > 1:815253/1‑100 (MQ=255)
agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAt < 1:1720146/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc < 1:496457/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 2:1766521/1‑100 (MQ=255)
cacaGCGCCACCGGGGATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa < 1:2023258/100‑1 (MQ=255)
caGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt < 2:2592686/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTGGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATa < 2:740862/100‑1 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGGTTTGTTTATGCAGGATGCGGAGTTAACGCGTTATGTGGCCTACTATATCGTGCAAATTCAATAc > 2:723767/1‑100 (MQ=18)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATa < 1:2174988/99‑1 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATAc < 1:2362895/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt > 2:1267714/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACCAAATCGTGAAAATTccctacct > 1:1516866/1‑91 (MQ=17)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt > 1:1127505/1‑100 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt‑tt < 1:1930106/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt‑ttt > 2:2564313/1‑100 (MQ=255)
cttccgatcttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt‑ttt < 2:41584/91‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCg > 2:2053708/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTa < 1:1295404/100‑1 (MQ=255)
cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGc > 2:1375860/6‑100 (MQ=18)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAt‑tttagatcggaag > 1:41584/1‑90 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTg < 2:1458449/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGa > 1:1376531/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGa > 2:458724/1‑100 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATa < 2:1637751/99‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCg < 1:887673/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCgg < 1:697698/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGa > 1:427969/1‑99 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAg > 1:2220587/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAgc > 2:697753/1‑100 (MQ=255)
cttttgtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCA‑GAGA‑TTGCGTAGGCCTGATAAGCGTAgcgc > 2:337654/10‑100 (MQ=11)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCA > 2:1156369‑M1/1‑100 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCA < 1:1824567‑M1/100‑1 (MQ=255)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCa > 2:1443529/6‑100 (MQ=17)
tgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAg > 1:261442/6‑100 (MQ=21)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAG < 1:2178491‑M1/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAg > 2:2460344/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCA‑GAGA‑TTGCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:2246027/5‑100 (MQ=11)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCA‑GGGA‑CTATGTAGGCCTGATAAGCATAGCGCATCAg > 1:1148294/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAACCGCGCAAATTCAATATATTGCG‑GAGA‑AAATGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2514996/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1794539/5‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAgg > 1:161663/4‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1474869/3‑100 (MQ=21)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1617054/1‑100 (MQ=255)
ggacggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑GAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:296812/11‑100 (MQ=21)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCCCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:2455196/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGCA‑ATCT‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 2:869947/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCA‑GAGA‑TTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:411202/2‑100 (MQ=11)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGAAATCGTGCTAATTCAATATATTGTG‑GGCT‑CCACGTAGGCCTGATAAGCGTAGCGCATCAgaaa > 1:79749/2‑97 (MQ=18)
ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTGCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1752695/2‑100 (MQ=17)
gtcggataaggcgTTCACGCCGCATCCGACCCACAAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑GAT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:504976/10‑99 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1313481/1‑100 (MQ=255)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑TGACGTAGGCCTGATAAGCGTAGCGCATCAGGCaga > 2:195403/1‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:2288827/9‑98 (MQ=25)
cggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:1322522/8‑100 (MQ=17)
ngataaggcgTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:2597082/7‑98 (MQ=21)
gggtGCGGCGTTCACGCCTTATCCGGCCTACAAAATCGTGCAAATTCCATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 2:679705/96‑1 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTGCA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2450080/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCGTGCAAATTCAATACATTGCA‑TGGG‑CCATGTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:921094/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGT‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1001213/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCA‑GAGT‑TAACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1436950/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTGCA‑ATCT‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 2:837999/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAATCGCTTAAATTCAATATATTGCA‑CCAT‑CCTCGTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:1988629/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2474515/7‑100 (MQ=18)
gataaggcgTTTACGCCGCATCCGGCATACAAAATCGTGCTAATTCAATATATTGCA‑GAAA‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:495377/6‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatctt > 1:871028/6‑95 (MQ=25)
gataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTGCA‑GGAA‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgtttt > 1:196017/6‑100 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1177594/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:1403196/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:549362/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:1906755/100‑1 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:190575/100‑1 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:1697993/100‑1 (MQ=255)
gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 2:608934/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:2446477/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2303000/100‑1 (MQ=255)
aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:626747/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:325568/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:356216/1‑100 (MQ=255)
cGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAtn < 1:2427260/99‑2 (MQ=255)
gCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:626750/100‑1 (MQ=255)
ttATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:549365/100‑1 (MQ=255)
ttATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt > 1:734498/1‑100 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
