Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A4 F191 I0 R1
|
105 |
142.7 |
6924153 |
96.8% |
6702580 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
21.2% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 21.2%
| 651.2
/ 180.8
| 251 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (103/94); new base G (51/2); total (155/96) |
| Fisher's exact test for biased strand distribution p-value = 2.09e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-01 |
Only 100 of 253 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083
|
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:1473459/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:943263/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCGTGGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 2:157112/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1244809/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3153067/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2714226/100‑3 (MQ=37)
gcgcTGCACGCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 2:2203751/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 1:2172834/1‑99 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACGAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:1928874/1‑100 (MQ=255)
gttGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:2338309/3‑100 (MQ=255)
cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa > 2:2641531/1‑100 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt > 1:338329/1‑100 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt < 1:1138382/100‑1 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGt > 2:1786807/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:3349735/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:1902549/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:457585/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:38623/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:2747907/1‑100 (MQ=255)
gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCaa > 1:2655090/1‑99 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:383993/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:2029878/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:1145506/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:903231/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt < 2:2465653/100‑1 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 1:1250060/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt < 1:1214455/100‑1 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:1359710/1‑100 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg > 1:2231321/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 1:1988304/100‑1 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At < 2:2238163/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑tt‑‑t > 2:2394041/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCg > 2:3120581/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCg < 1:2920629/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCg > 2:1981182/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTAGTTTATGCCGGATACGGCGTTAACGCCTTATCCGTCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑At‑tt‑‑t > 1:79632/1‑98 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGt > 1:2443640/1‑100 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGt > 2:1051815/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGTCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTa > 1:203407/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGt < 1:1608798/99‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTa < 2:1603235/100‑1 (MQ=255)
cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGc > 1:10325/6‑100 (MQ=18)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCt > 1:732815/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTg < 2:563523/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGa > 1:3166985/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TAGTAGGCCTGa > 1:2273254/1‑100 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATaa < 1:1316700/100‑1 (MQ=255)
aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAg > 1:2542253/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGa > 1:735502/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGa < 1:2338290/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAg < 2:3317055/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAgc > 1:410848/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAgcg < 1:63398/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAgcg < 1:2832996/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAgcg > 2:876262/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑CCGTAGGCCTGATAAGCGGAg > 1:963954/1‑98 (MQ=255)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑AT‑‑TGGTAGGCCTGATAAGCGCAGCGCATc > 2:2006981/7‑100 (MQ=21)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCa < 2:2599090/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:1474492/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAg > 2:2879289/1‑100 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TC‑‑ACGTAGGCCTGATAAGCGTAGCGCATCAg > 2:750789/5‑100 (MQ=17)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TC‑‑ACGTAGGCCTGATAAGCGTAGCGCATCAg > 2:249762/5‑100 (MQ=17)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CA‑‑T‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2085240/5‑100 (MQ=18)
taggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GA‑GT‑TC‑‑ACGTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1300739/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAgg < 2:3165432/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2526943/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1027473/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGAT‑CA‑‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3262955/3‑100 (MQ=17)
aggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGc > 2:1264129/3‑100 (MQ=18)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2687757/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGCA‑‑A‑TT‑CAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:825341/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑CT‑‑GCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:771773/2‑100 (MQ=17)
gacggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GT‑TT‑AT‑‑TGGTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:344159/10‑99 (MQ=25)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:2185395/1‑100 (MQ=255)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt < 2:2777647/100‑1 (MQ=255)
tggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 1:977133/8‑99 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:649910/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTGAATATATTGCA‑GA‑AA‑CC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2986309/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TG‑AG‑CC‑‑ACGTAGGCCTTATAAGCGTAGCGCAAAAGGCAgttt > 1:2962707/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GG‑AG‑TT‑‑ATGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 2:505524/7‑98 (MQ=25)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GA‑ATCCC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgcg > 2:586030/6‑97 (MQ=21)
gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGCATGG‑GC‑CA‑‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttt > 2:2554182/6‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GG‑AA‑AC‑‑ACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgtttt > 2:1687849/6‑100 (MQ=18)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GA‑AA‑CC‑‑TTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:828953/4‑100 (MQ=18)
taaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GG‑AC‑CA‑‑T‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 2:1283102/4‑100 (MQ=18)
taaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GG‑AG‑CT‑‑GCGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttggc > 2:2897580/4‑97 (MQ=18)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:2255934/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 1:2964701/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:1786791/100‑1 (MQ=255)
ggcgTGAACGCCATAGCCGGCCGAC‑AAAATCGTGCAGATTCAGTACAGTGCA‑TA‑AG‑GG‑‑GCGTATGCCTGAGAAGCGGAGCGCATCAGGCATTtttgcctt > 1:2017791/1‑100 (MQ=12)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:3447954/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:977525/1‑100 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 2:338821/100‑1 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc > 2:848318/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGAATCAGGCATTTTTGCCTTTGCCa > 1:1192970/1‑98 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 2:44088/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:1359698/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:2310902/100‑1 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:568494/1‑100 (MQ=255)
ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:1503866/100‑1 (MQ=255)
|
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GA‑AT‑TT‑‑TCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705887‑3706083
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
