Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F232 I0 R1
|
243 |
156.3 |
7646460 |
93.8% |
7172379 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
37.0% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 37.0%
| 455.6
/ inf
| 311 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (94/102); new base G (107/8); total (201/110) |
| Fisher's exact test for biased strand distribution p-value = 1.60e-17 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.24e-02 |
Only 100 of 317 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082
|
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGGTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt > 2:1574190/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:682342/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:1757085/1‑100 (MQ=255)
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:1793100/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtagatc > 2:1367714/1‑95 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3082497/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGTTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 1:796663/100‑1 (MQ=37)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGc < 2:126873/100‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:2988176/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:2093381/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaac < 1:3450998/100‑7 (MQ=25)
cgcTGCACCCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCAGCCGGCATaaa < 2:3592721/99‑3 (MQ=21)
cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaaa < 2:5648/100‑1 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1083245/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:3645843/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:967951/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:3817292/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACACATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCAGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:2290059/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:118766/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:957826/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAATTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:1112869/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 2:120833/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 2:3816286/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:2240920/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:1099062/1‑100 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCACATTCAATa > 2:2780546/1‑100 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAt > 2:1640021/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 1:2515687/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:1616706/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAT‑GAAATCGTGCAAATTCAAt < 2:2133644/91‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGc < 2:3674941/97‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑Ga > 1:446179/1‑100 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑tt > 2:3339301/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑ttt > 2:479621/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAt‑ttt > 1:2234311/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAGACATTGCA‑GAAt‑ttt > 1:3765345/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGTGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑g < 2:2583548/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTTC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑g < 2:2038941/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑g > 2:3437178/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑g < 2:3784808/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTa < 1:889509/100‑1 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGc > 1:3172896/1‑100 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGc < 2:2016134/100‑1 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGAt < 2:748069/100‑1 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGAt > 1:1678092/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATa < 2:1150954/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 1:3339326/100‑1 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 1:155417/100‑1 (MQ=255)
tttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcgc < 1:2672033/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1312236/100‑1 (MQ=255)
ttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGCGCGCATc > 2:1453080/7‑100 (MQ=17)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:1158904/1‑100 (MQ=255)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAgg > 1:977174/4‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑TGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcg > 1:1479990/3‑99 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGAT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:856878/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1840792/3‑100 (MQ=18)
ggtcggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAAC‑GAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2310410/11‑100 (MQ=21)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:624337/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGCA‑AGAT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2455217/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:741318/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3260923/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:3785975/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3708403/2‑100 (MQ=17)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:3595745/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2780475/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGCA‑‑ATA‑TGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGcgat > 1:1139482/1‑97 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1234710/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AAT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3191290/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:50490/1‑99 (MQ=18)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1383822/1‑100 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:352125/9‑100 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAttt > 1:2046392/9‑100 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3138830/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3494678/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1994023/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCT‑CCGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:551566/9‑98 (MQ=18)
ccGGATAAGGCGTTCGCGCCGCATCCGGCCTAC‑AAAAGTTTGCAAATTCAATAAATTGCA‑GAAT‑TCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAtt > 1:1516480/1‑100 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:327461/8‑100 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagtt > 1:2212209/8‑97 (MQ=18)
cGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTT‑ATTG‑‑GAAGGCCTGATAAGCGCAGCGCATGAGGCaatc > 1:1367584/1‑97 (MQ=21)
ggataaggcgTTTACGCCTTATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3130471/7‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑GAATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:2127160/7‑98 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGCA‑GGAC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3432520/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTGCA‑CCAT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCActtc > 2:2504279/7‑99 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1447003/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAG‑CTGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2296723/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTGTGCAAATTCAATATATTGCA‑GGAA‑ACAC‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGCAgttt > 2:2260828/7‑100 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:1863991/100‑1 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:3760042/100‑1 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:2336503/1‑100 (MQ=255)
cgTTGACGCCTTATCCGGCATAC‑AAAATCGTGCAAACTCAATACATTACA‑GAAT‑TTTC‑‑GTGGGCCTCATAAGCGGAACGCATCACGCAgtttgtcttt > 2:1026358/1‑92 (MQ=21)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:1743320/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:2838186/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 1:2965169/100‑1 (MQ=255)
tAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:1944686/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:2435465/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:2392076/100‑1 (MQ=255)
gCCTTATCCGGCATAC‑AAAATCGTGAAAATTCAATACATTGCA‑GAAG‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGAATTTTTGCCTCTGCCATCAg < 2:1704788/100‑1 (MQ=18)
cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:1623238/1‑100 (MQ=255)
cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 1:1820416/100‑1 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
