Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F201 I0 R1
|
306 |
176.9 |
8831342 |
93.4% |
8248473 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
42.0% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 42.0%
| 337.1
/ inf
| 317 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (105/79); new base G (126/7); total (231/86) |
| Fisher's exact test for biased strand distribution p-value = 3.95e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.33e-02 |
Only 100 of 325 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
|
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:3759203/100‑1 (MQ=255)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt > 2:75385/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3288729/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:1244446/100‑1 (MQ=255)
atgtcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2490062/96‑3 (MQ=25)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2704199/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:2585685/100‑1 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa < 2:846729/100‑1 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:2433928/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aa > 1:981849/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:319880/1‑100 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGCGTATACCGATTATTGACAACGTGCGCATTGTATATACAGGATCAGTCATTAACGCCTTATCCGGACTAC‑aaact > 1:2932332/1‑98 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:1343124/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg > 1:152041/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 2:1629355/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 1:2262787/99‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3809608/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa > 2:2648129/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCCCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3082814/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc > 2:1976629/1‑100 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:2374408/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa < 2:1348426/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 1:2267071/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCa > 2:3086021/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGTTTGTTGACAAAGTGCGATTTGGTTATGCCGGATGTAACGATCACGCATTATCCGGCGTAC‑TAAAACCTGCaaa > 1:630445/1‑94 (MQ=16)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACAtt > 2:2841549/1‑100 (MQ=255)
cttataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑Gaa < 2:1386819/98‑1 (MQ=255)
tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCCGATTCGGCGTTAACGACTTATCCGGCCTAC‑AAAATCGTGCAGATTCAATACATTG‑C‑‑A‑GAAt‑t > 1:1484584/1‑100 (MQ=18)
ataCAGATGGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑t < 1:341159/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑tt > 2:1726913/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAt‑t‑‑‑tt > 1:1074708/1‑100 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTc > 2:1940308/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCg < 2:2995149/100‑1 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAgg > 2:340911/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTGACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg < 1:2210155/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg < 2:1470226/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 1:938256/1‑100 (MQ=255)
aaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTg > 2:1834330/3‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa < 2:2157709/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGa < 2:222977/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGc < 1:1976622/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTA‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGc < 1:2470434/100‑1 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa > 2:4046874/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGa < 2:2691949/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 1:2371245/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgc < 2:2176125/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAgcg > 2:2748548/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCa > 1:737346/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc > 1:141880/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc < 2:3531107/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATc < 1:1690462/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCTGCATCCGGCCTAC‑AAAATCGCTTAAATTCAATATATTG‑C‑‑A‑CCAT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:645012/5‑100 (MQ=18)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAACCTGCAAATTCAATATATTG‑C‑‑A‑GGAT‑A‑‑‑CGTGTAGGCCTGATAAGCGTAGCGCATCAg > 2:2582802/5‑100 (MQ=18)
gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTG‑‑ATGCAT‑C‑‑‑CT‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:515598/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2044987/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GAAA‑A‑‑‑T‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3145920/4‑100 (MQ=18)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAgg > 1:3266858/1‑100 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTG‑C‑‑A‑GAAA‑T‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3205087/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:2096103/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGGAC‑T‑‑‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGc > 2:3792127/3‑100 (MQ=18)
tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:2898305/1‑100 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:693336/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAATCC‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:4283658/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2322936/2‑100 (MQ=17)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAACAGTGCAAATTCAATATATTG‑C‑‑A‑ATCT‑T‑‑‑CTGGTAGGCCTGATAAGCATCGCGCATCAGGCa > 1:1574412/2‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTG‑C‑‑‑‑‑AAT‑TCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:1218092/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTAC‑AAAAGCACGCAAATTCAATATATTG‑C‑‑A‑GAGA‑T‑‑‑TGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:4098772/2‑100 (MQ=11)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCATAC‑‑AAACCGCGCAAATTCAATATATTG‑CGGA‑GAAA‑A‑‑‑T‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGctg > 2:3562998/2‑98 (MQ=21)
gtcggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTG‑C‑‑A‑GGAA‑C‑‑‑GATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:3266383/10‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAG‑C‑‑‑CACGTAGTCCTGATAAGCGTAGCGCATCAGGCag > 1:1008699/1‑99 (MQ=17)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:3517417/1‑99 (MQ=17)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1376719/9‑98 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1177795/9‑98 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTG‑C‑‑A‑TGGG‑C‑‑‑CATGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:1252887/9‑98 (MQ=17)
ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:457522/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:4384513/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 2:3873554/9‑98 (MQ=25)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAGTCGTATAAATTCAATGTATTG‑C‑‑A‑GTTT‑A‑‑‑TTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaat > 1:3641854/9‑98 (MQ=25)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTG‑C‑‑A‑AGAT‑T‑‑‑TTCGTAGGCCTGATAAGCGTAGCGCATCAGGCacg > 2:4129596/9‑98 (MQ=17)
ccGGATAAGGCGGTCACTCCGCATCCGACCTAC‑‑AAATCATGCAAATCCAAAATATTG‑C‑‑A‑GGAG‑G‑‑‑TATGTATGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:4302543/1‑99 (MQ=18)
cggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑‑‑GAAT‑CC‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttg > 2:2420656/8‑99 (MQ=21)
cggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTG‑C‑‑AGGGAC‑T‑‑‑AT‑GTAGGCCTGATAAGCATAGCGCATCAGGCagct > 2:4234326/8‑97 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGCAAATTCAATATATTG‑C‑‑A‑GAGT‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3355097/7‑100 (MQ=17)
ggataaggcgTTCGCGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTG‑C‑‑A‑TGAG‑T‑‑‑CACGTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt < 1:4048973/94‑1 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2287956/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3852956/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3330045/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTG‑C‑‑A‑GGAC‑C‑‑‑AT‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3937798/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCACTTAAATTCAATATATTG‑C‑‑A‑CCAT‑C‑‑‑CTCGTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 1:2987483/7‑99 (MQ=21)
ggataaggcgGTTACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑A‑ATCT‑C‑‑‑CGTGTAGGCATGATAAGCGTAGCGAATCAGGccat > 1:4190648/7‑95 (MQ=17)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 2:923938/100‑1 (MQ=255)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 1:1881978/4‑98 (MQ=18)
taaggcgTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTG‑C‑‑A‑GAAA‑C‑‑‑CTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttgc > 1:3555881/4‑100 (MQ=18)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 2:4160287/1‑100 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAA‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2797649/1‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtttttttttt > 1:1803177/1‑95 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:3746961/99‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:1301512/1‑100 (MQ=255)
cTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAtacaag > 2:1050057/1‑95 (MQ=255)
ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:209480/100‑1 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTG‑C‑‑A‑GAAT‑T‑‑‑TTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
