Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F228 I0 R1
|
182 |
117.2 |
5818924 |
93.6% |
5446512 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
39.8% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 39.8%
| 247.6
/ 280.7
| 205 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (57/66); new base G (71/10); total (128/77) |
| Fisher's exact test for biased strand distribution p-value = 7.49e-10 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.91e-02 |
Only 100 of 206 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAG > NC_000913/3705885‑3706080
|
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCATCGGGTATACAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 1:2903641/100‑1 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 2:110610/100‑1 (MQ=255)
ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg > 2:1056155/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:353427/100‑2 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:2556677/100‑3 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:670031/100‑3 (MQ=37)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑a < 1:2392408/100‑1 (MQ=37)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a > 2:2135555/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aa > 2:1580979/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:2114859/1‑100 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt < 1:1201430/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACACAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:2682228/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:1628590/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCa > 2:1863234/1‑100 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAAAGACTTATCCGGCCT‑‑AC‑AAAATCGTGc < 1:266293/99‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:1164818/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 2:1442715/100‑1 (MQ=255)
acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa < 1:748110/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt > 2:1036276/1‑100 (MQ=255)
aacGGGTATACAGATTGTTGACAAAGTGCGCATTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc > 2:1960069/3‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGc < 2:2662823/100‑1 (MQ=255)
cggggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACAtt < 1:319334/95‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAtt‑‑‑t‑t > 1:2285169/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAAtt‑‑‑t‑t > 2:1833524/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑g > 2:1486724/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑g < 1:1070657/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑g < 1:767779/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑Gt < 1:1056153/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTCAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑Gt < 1:1863226/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTa < 1:2253249/100‑1 (MQ=255)
aTTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAg > 2:2234618/1‑100 (MQ=255)
ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAgg < 1:2278694/100‑1 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGcc < 1:536930/99‑1 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGAt < 1:1023825/100‑1 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGAt > 2:1373498/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATa > 1:2423367/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATa < 2:1553936/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGc < 1:1719736/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCg < 2:2066772/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCg > 1:8102/1‑100 (MQ=255)
gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGa > 1:1134315/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgc > 1:1899801/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCCTTAACCCCATAGCCGGCCT‑‑AC‑AAAGTCGTGCAAACTCCGTACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATCAGCGGAgc < 1:211091/100‑1 (MQ=18)
attttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAgcgc > 2:796438/10‑100 (MQ=18)
attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgcgc > 2:1839977/10‑100 (MQ=18)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa > 2:582712/1‑100 (MQ=255)
ttcgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCGT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCTC‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:2311783/8‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:287684/1‑100 (MQ=255)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACCTTGCTAATTCAATATATTGCA‑GGGAC‑‑‑T‑AT‑‑GTAGGCCTGATAAGCATAGCGCATc > 1:2351461/7‑100 (MQ=18)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTGCA‑GGAGT‑‑‑T‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 2:2138085/7‑100 (MQ=21)
gatctggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATc < 2:1402921/94‑1 (MQ=18)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 2:501784/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 1:2447633/100‑1 (MQ=255)
tgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AATTCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATc > 1:1920233/6‑100 (MQ=21)
gtaggCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCA‑GAGAT‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:373862/5‑100 (MQ=14)
taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:621294/4‑100 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑T‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:739538/4‑100 (MQ=25)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑T‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 2:2291973/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:2519674/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg < 1:1396944/97‑1 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTGCA‑GGAGC‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1634854/4‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2882801/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:889574/3‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGGCC‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:2129657/3‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1492369/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACCTGCAAATTCAATATATTGCA‑GGATA‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:150656/3‑100 (MQ=17)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 2:199529/100‑1 (MQ=255)
ggctggataaggcgTTCACGCCGCATCCAGCCT‑‑AC‑AAAATTGTGCAAAATCAATGGATTGCA‑CAGCT‑‑‑A‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1699792/11‑100 (MQ=25)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑AATTCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:2212556/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGACC‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2741719/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGCA‑ATCTC‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2588977/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑AATC‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAgatc > 1:1402919/2‑97 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:2211422/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1317900/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATGCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑CTAGGCCTGATAAGCGGTGCGCATCAGGCAt > 2:1143506/1‑100 (MQ=255)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑GAAATCGTGCTAATTCAATATATTGTG‑GGCTC‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:715891/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCA‑GTTTA‑‑‑T‑TG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 2:2906945/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAAATTGAT‑CGATC‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2513525/1‑99 (MQ=21)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1597626/1‑99 (MQ=21)
gCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:39523/1‑100 (MQ=18)
ccggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:191299/9‑98 (MQ=17)
ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1658508/9‑98 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCA‑CCATC‑‑‑C‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 2:2369487/9‑98 (MQ=21)
ccggataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:278676/9‑100 (MQ=18)
ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGCGCGCATCAGGCAt > 2:1286012/1‑99 (MQ=255)
ccGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1448217/1‑100 (MQ=255)
ccGGATAAGGCGTTAACGCCGCATCCGGCATAAAC‑AAAATCGTGCAAAATCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:2065620/1‑100 (MQ=17)
cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑T‑GAATC‑‑‑CCTT‑‑GTAGGCCTGATAAGCGTAACGCATCAGGCAttt > 1:2752226/8‑99 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCA‑GAAAC‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:300180/7‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCA‑GAGTT‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1188413/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCA‑GGACC‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2682618/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTGCA‑TGAGC‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1979177/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTGCAGGAACG‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 2:88122/7‑96 (MQ=25)
taaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAACTCAATATATTGCA‑GAGAT‑‑‑C‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttagc > 1:609151/4‑97 (MQ=17)
tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttttt > 1:1390426/1‑98 (MQ=255)
cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:2413054/100‑1 (MQ=255)
ttAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcc < 2:1209265/100‑1 (MQ=255)
ttAACGCCTTACCCGGCCT‑‑AC‑AAAATCGTGCATATGCAAGACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGTGCGCATCAGGCATTtttgcctttgcc < 2:174846/100‑1 (MQ=21)
gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:2565758/100‑1 (MQ=255)
gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1394979/1‑100 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCA‑GAATT‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAG > NC_000913/3705885‑3706080
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
