Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F183 I1 R1
|
63 |
136.1 |
6714777 |
94.6% |
6352179 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,596,220 |
(TCA)3→2 |
coding (182‑184/927 nt) |
livH ← |
branched‑chain amino acid ABC transporter permease |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3596212 |
3596214 |
3 |
97 [0] |
[0] 98 |
livH |
branched‑chain amino acid ABC transporter permease |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
3596215 = | 0 (0.000) | 87 (0.700) |
63/182 |
1.4 |
100% |
coding (189/927 nt) |
livH |
branched‑chain amino acid ABC transporter permease |
| ? | NC_000913 |
= 3596211 |
0 (0.000) | coding (193/927 nt) |
livH |
branched‑chain amino acid ABC transporter permease |
GATK/CNVnator alignment
N/A
