Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F169 I0 R1
|
76 |
156.9 |
7610945 |
95.9% |
7298896 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,951,598:1 |
+T |
100% |
pseudogene (57/663 nt) |
ilvG → |
pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,951,597 | 1 | . | T | 92.9%
| 533.3
/ 33.0
| 170 | pseudogene (56/663 nt) | ilvG | pseudogene, acetolactate synthase 2 large subunit, valine‑insensitive; acetolactate synthase II, large subunit, cryptic, interrupted |
| Reads supporting (aligned to +/- strand): ref base . (5/7); new base T (68/88); total (73/97) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 186 total aligned reads displayed.
TTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑T‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCAC > NC_000913/3951498‑3951691
|
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTGCTGGCGTTACGACC‑a > 1:1815775/1‑100 (MQ=255)
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑a > 1:1856187/1‑100 (MQ=255)
tttAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCACCAACACTGCGCGCAGCTGCCTGATGACCATTCCTGGCGTTACGACC‑a > 1:644399/1‑100 (MQ=255)
tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑tt < 2:2420292/100‑2 (MQ=255)
tAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑tt > 2:1825841/1‑99 (MQ=255)
aaaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGTCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑ttc < 1:1480454/100‑3 (MQ=255)
aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑T‑tcc < 1:3570466/100‑1 (MQ=255)
aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑T‑tcc < 2:2738742/100‑1 (MQ=255)
aaTGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGAGTGATGAACATTCCTAGCGTTACGACC‑A‑tt < 1:173397/98‑2 (MQ=255)
tGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑ttcccg > 2:1367857/1‑95 (MQ=255)
gCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCgg < 2:2332509/100‑1 (MQ=255)
tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTg > 2:3786576/1‑100 (MQ=255)
tctGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGCCGTTACGACG‑A‑ttcccg > 1:1287917/1‑92 (MQ=255)
tGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGAc > 2:167025/1‑100 (MQ=255)
gTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACg > 2:1324958/1‑100 (MQ=255)
gTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACg > 1:589656/1‑100 (MQ=255)
aCCTGCATTACAGCAGCCGTTAAATCAATGACTCGCAGCAACACTGCGCTCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCt < 1:3196556/99‑1 (MQ=255)
aCCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTa < 2:304652/100‑1 (MQ=255)
ccAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCt > 1:2443571/1‑98 (MQ=255)
ccAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTAt > 1:2724702/1‑100 (MQ=255)
cAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATc > 1:1569915/1‑100 (MQ=255)
cAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATc < 2:1447125/100‑1 (MQ=255)
aGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCt < 2:3386916/100‑1 (MQ=255)
gCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTa < 2:342493/100‑1 (MQ=255)
gCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTa < 1:1293947/100‑1 (MQ=255)
aCAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACgcgc > 1:3075611/1‑100 (MQ=255)
aCAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACgcgc > 1:1156305/1‑100 (MQ=255)
agcCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttg < 1:1346398/100‑1 (MQ=255)
gcCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgt > 2:1581073/1‑100 (MQ=255)
cggtAAATCAATGACTCGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgttg < 1:3410879/97‑1 (MQ=255)
cGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgttg < 2:1051082/100‑1 (MQ=255)
cGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgttg > 2:3345364/1‑100 (MQ=255)
cGTTAAATCAATGACTGGCAACAACACTGCGCGGAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑GCCAGTGACGCTATCTACGCGCCgttgtt > 1:669386/1‑99 (MQ=255)
gTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgttgt < 2:3291265/100‑1 (MQ=255)
gTTAAATCAAGGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTTCGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCgttgttg < 1:2335018/99‑1 (MQ=255)
aTCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTaaaa > 1:690691/1‑100 (MQ=255)
aTCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCGACGCGCCGTTGTTGTTaaaa < 1:2319516/100‑1 (MQ=255)
tCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaac < 2:3683100/100‑1 (MQ=255)
cAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca < 1:2287083/100‑1 (MQ=255)
cAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca > 2:2682403/1‑100 (MQ=255)
aaTGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAaaca < 1:892044/99‑1 (MQ=255)
tGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACt < 1:3224755/100‑1 (MQ=255)
gACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTg < 1:3754921/100‑1 (MQ=255)
aCTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGt > 1:3294348/1‑100 (MQ=255)
tGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCg < 2:129240/100‑1 (MQ=255)
ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg > 1:602519/1‑100 (MQ=255)
ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg > 2:2897647/1‑100 (MQ=255)
ggCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCgg < 1:2568505/100‑1 (MQ=255)
gcagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGa < 2:398145/100‑1 (MQ=255)
cagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAt > 1:3742964/1‑100 (MQ=255)
cagcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGAt > 1:1457222/1‑100 (MQ=255)
agcaACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATc > 1:2014866/1‑100 (MQ=255)
gaagcacTGCGCGCGGCTGCTTGATCAACATTCCTGTCCATACGTCCAA‑T‑CCCGCGGGCGCCATCGCCGCGCCGTTGTTGTTAAAACAACGGGCgg < 1:1662044/92‑1 (MQ=255)
caACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGt > 2:2013176/1‑100 (MQ=255)
acacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaa < 2:2656718/100‑1 (MQ=255)
cacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTaaa < 2:916038/100‑1 (MQ=255)
aacTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTAAGACC‑ATT‑CCCGGTGACGCTATCTACGCGCAGTTGTTGTTAAAACAACTGTCGGATCGTaaa > 1:2674309/2‑100 (MQ=255)
acTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAAc > 1:3059202/1‑100 (MQ=255)
gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTACACCTGCg > 1:2857790/1‑100 (MQ=255)
gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg > 2:599303/1‑100 (MQ=255)
gcgcAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg < 1:1344429/100‑1 (MQ=255)
cgatctcTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCg < 1:1120396/94‑1 (MQ=255)
cgcAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCgg > 2:1404201/1‑100 (MQ=255)
gcAGCTGCGTGATGAACAGTCCTGGCGTTACGACC‑ATT‑CCCGGGGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGa < 2:3545725/100‑1 (MQ=255)
cTGCGTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGGCGGATCGTAAACCTGCgagatcg > 2:1120401/1‑94 (MQ=255)
cTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑T‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcg < 2:1583799/100‑1 (MQ=255)
gTGATGAACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcg < 1:3780604/100‑1 (MQ=255)
tgatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAACACAACTGTCGGATCGTAAACCTGc > 1:3500772/1‑88 (MQ=255)
tgatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcgt < 2:3758414/100‑1 (MQ=255)
gatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGcgtcgt > 2:70216/1‑99 (MQ=255)
gatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg < 1:3763443/100‑1 (MQ=255)
gatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg > 1:780907/1‑100 (MQ=255)
gatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg < 2:296438/100‑1 (MQ=255)
gatgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTg < 2:3107083/100‑1 (MQ=255)
tgaACATTCCTGTCGTTACGATC‑A‑TGCCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGa < 1:1224645/99‑1 (MQ=255)
tgaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAc > 2:3485201/1‑100 (MQ=255)
gaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc < 2:473264/100‑1 (MQ=255)
gaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc < 2:3622446/100‑1 (MQ=255)
gaACATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGAcc < 1:1582780/100‑1 (MQ=255)
aaCATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACca > 2:71654/1‑100 (MQ=255)
aaCATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACca > 1:1705141/1‑100 (MQ=255)
aCATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcac > 2:1976349/1‑100 (MQ=255)
aCATTCCTGGCGTTACGACC‑A‑T‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca < 1:10143/100‑1 (MQ=255)
cATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca < 1:2885890/100‑1 (MQ=255)
cATTCCTGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACcaca < 2:1856194/100‑1 (MQ=255)
cATTCCTGGCGTTACGACC‑ATT‑CCCGGCGACGCTAACTACGCCCCGTTGTTGTTAAAACAACTGCCGGATCGTAATCCTGCGGATTGCGTCGTGACcaca < 1:761619/100‑1 (MQ=255)
tGGCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGAtgtg < 1:3708261/100‑1 (MQ=255)
ggCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTgg > 1:815203/1‑100 (MQ=255)
gCGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTggg < 1:3115693/100‑1 (MQ=255)
cGTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTgggg > 1:1038140/1‑100 (MQ=255)
gTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgc < 2:3706236/100‑1 (MQ=255)
gTTACGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgc < 2:3266409/100‑1 (MQ=255)
aCGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCTGATTGCGTCGTGACCACCGATGTGGGgcagc < 2:2562327/100‑1 (MQ=255)
aCGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagc < 2:319628/100‑1 (MQ=255)
cGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCTTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca > 2:3575302/1‑100 (MQ=255)
cGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGCTGTGGGgcagc > 1:2071198/1‑99 (MQ=255)
cGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca < 2:2633487/100‑1 (MQ=255)
cGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagca > 2:973945/1‑100 (MQ=255)
cGACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCATGACCACAGATGTGGGgcagca < 1:2929960/100‑1 (MQ=255)
gACC‑ATT‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGgcagcan < 1:3345339/100‑2 (MQ=255)
|
TTTAAATGCTCTGTTACCAGCATTACAGCAGCCGTTAAATCAATGACTGGCAGCAACACTGCGCGCAGCTGCGTGATGAACATTCCTGGCGTTACGACC‑A‑T‑CCCGGTGACGCTATCTACGCGCCGTTGTTGTTAAAACAACTGTCGGATCGTAAACCTGCGGATTGCGTCGTGACCACAGATGTGGGGCAGCAC > NC_000913/3951498‑3951691
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
