Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I1 R1 186 136.5 6958264 92.1% 6408561 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,563,518 (A)5→6 intergenic (+401/‑74) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,563,5131.A97.5% 410.6 / 2.1 122intergenic (+396/‑79)yffP/yffQCPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base . (2/1);  new base A (63/56);  total (65/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 133 total aligned reads displayed.

AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑AAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563414‑2563607
                                                                                                     |                                                                                               
 ggTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑a                                                                                                >  2:666624/1‑100 (MQ=255)
  gTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aa                                                                                               >  2:2500191/1‑100 (MQ=255)
     aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaa‑aa                                                                                           <  2:2129635/100‑1 (MQ=255)
     aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaa‑aa                                                                                           >  2:257618/1‑100 (MQ=255)
      aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACCACAAAATAAAGATGGGAGG‑T‑aaa‑aaa                                                                                          >  1:846523/1‑99 (MQ=255)
        tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑aaa‑aaatg                                                                                        <  1:1101655/100‑4 (MQ=255)
             gATGCAGATCGCTTTTTCTCTTCATGCATTTTTTTTTAATTTATTCAACTAAAGGCAGTTCCCAACAACAAATTAAAGATGGGATC‑T‑aaa‑aaatg                                                                                        >  1:1186454/1‑92 (MQ=255)
              aTGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACgg                                                                                   <  2:3118893/100‑1 (MQ=255)
               tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGt                                                                                  >  1:2093884/1‑100 (MQ=255)
                gCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTg                                                                                 >  2:730122/1‑100 (MQ=255)
                  aGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTggg                                                                               >  2:3470924/1‑100 (MQ=255)
                   gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGa                                                                              >  2:1754210/1‑100 (MQ=255)
                   gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGa                                                                              >  2:2640842/1‑100 (MQ=255)
                   gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGATggg                                                                               >  1:3381544/1‑99 (MQ=255)
                    aTCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGaa                                                                             >  2:3375652/1‑100 (MQ=255)
                     tCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAg                                                                            >  2:1464243/1‑100 (MQ=255)
                        cTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTgg                                                                         >  1:2490586/1‑100 (MQ=255)
                        cTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGCGAGA‑TAAAA‑AATGAAACGGTGGGAAGTgg                                                                         >  2:16056/1‑100 (MQ=255)
                           tttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCtt                                                                      <  2:60478/100‑1 (MQ=255)
                              cccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTAc                                                                   <  2:2510790/100‑1 (MQ=255)
                               ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACt                                                                  >  1:3237740/1‑100 (MQ=255)
                               ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACt                                                                  >  2:2681177/1‑100 (MQ=255)
                               ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACt                                                                  >  1:3237741/1‑100 (MQ=255)
                               ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACt                                                                  >  2:2158362/1‑100 (MQ=255)
                                cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTg                                                                 >  2:40940/1‑100 (MQ=255)
                                cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTg                                                                 <  2:3083872/100‑1 (MQ=255)
                                 ttCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTgg                                                                <  2:932785/100‑1 (MQ=255)
                                 ttCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTgg                                                                <  2:487660/100‑1 (MQ=255)
                                  tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               <  2:3042956/100‑1 (MQ=255)
                                  tCAGGCATTTTTATTTAAATCAATCAACGAAAAGCAGTTCCCAACAACAAAATAAAGATGAGAAG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               <  1:162580/100‑1 (MQ=255)
                                   cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTg                                                              <  1:2500158/100‑1 (MQ=255)
                                   cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTg                                                              <  2:2868605/100‑1 (MQ=255)
                                     ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGAt                                                            <  2:937330/100‑1 (MQ=255)
                                      gCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATg                                                           <  2:1350338/100‑1 (MQ=255)
                                       cATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGAAGG‑TAAAA‑AATGAAACGGTAGGAAGTGGCTTTACTGGTGATg                                                           >  1:509945/1‑99 (MQ=255)
                                          ttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa                                                       <  1:1223113/100‑1 (MQ=255)
                                          ttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa                                                       <  1:1030710/100‑1 (MQ=255)
                                              gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   >  1:668020/1‑100 (MQ=255)
                                              gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt                                                    >  1:780537/1‑99 (MQ=255)
                                              gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑AAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                  <  1:2375427/100‑1 (MQ=255)
                                              gTTTAATACAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   >  1:1820081/1‑100 (MQ=255)
                                               tttAATTCACTCAACGAAAGGCAGGTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAATCGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                  <  1:3205607/100‑1 (MQ=255)
                                               tttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                  >  1:2315841/1‑100 (MQ=255)
                                               tttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                  >  2:380853/1‑100 (MQ=255)
                                                ttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg                                                 <  1:2640804/100‑1 (MQ=255)
                                                 tAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt                                                <  1:27819/100‑1 (MQ=255)
                                                  aaTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGtt                                               >  1:639511/1‑100 (MQ=255)
                                                   aTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGttt                                              >  2:2936500/1‑100 (MQ=255)
                                                    ttCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTggagat                                             >  1:512161/1‑96 (MQ=255)
                                                      caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt                                           >  2:586356/1‑100 (MQ=255)
                                                       aatcaaCGAAAGGCAGTTCCCATCAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          >  1:600748/1‑100 (MQ=255)
                                                       aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  1:356198/100‑1 (MQ=255)
                                                       aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  1:1651260/100‑1 (MQ=255)
                                                       aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGAAAGAAAG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  1:1728295/100‑1 (MQ=255)
                                                         tcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa                                        >  1:2304766/1‑100 (MQ=255)
                                                           aaCGAAAGGCTGTTCCCAACAACAAAATAAAGATGGGAGGAA‑AAA‑AATGAAACGGTGGGAAGTGGCTTTACGGGTGATGGTAATGTGGGTTTGCTGCAtt                                      >  1:1538001/1‑100 (MQ=255)
                                                           aaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAtt                                      <  1:1756655/100‑1 (MQ=255)
                                                           aaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAtt                                      >  1:798764/1‑100 (MQ=255)
                                                           aaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGCGGGAAGTGGCTTTCCTGGGGATGGGAAAGTTGGTTTGCTGTa                                        >  2:3132592/1‑98 (MQ=255)
                                                             cGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGa                                    <  2:2296056/100‑1 (MQ=255)
                                                             cGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGa                                    <  2:2093915/100‑1 (MQ=255)
                                                               aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAAc                                  <  2:1343164/100‑1 (MQ=255)
                                                                aaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt                                 <  1:2704752/100‑1 (MQ=255)
                                                                aaGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt                                 >  2:68148/1‑100 (MQ=255)
                                                                  ggCAGTTCCCAACAACAAAATAAGGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgt                               >  1:84038/1‑100 (MQ=255)
                                                                  ggCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgt                               <  1:914592/100‑1 (MQ=255)
                                                                  ggCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgt                               >  2:295105/1‑100 (MQ=255)
                                                                   gCAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgtg                              <  2:2836837/100‑1 (MQ=255)
                                                                    cAGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGa                             >  2:2108396/1‑100 (MQ=255)
                                                                     aGTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGaa                            <  2:3110325/100‑1 (MQ=255)
                                                                      gTTCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag                           >  2:604320/1‑100 (MQ=255)
                                                                       gtCCCAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag                           <  1:2428367/98‑1 (MQ=255)
                                                                          ccAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       >  1:1213198/1‑100 (MQ=255)
                                                                          ccAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       >  1:1213223/1‑100 (MQ=255)
                                                                          ccAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       <  2:1683130/100‑1 (MQ=255)
                                                                          ccAACAACAAAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       <  2:1116793/100‑1 (MQ=255)
                                                                             acaacaaAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACg                    <  1:3047072/100‑1 (MQ=255)
                                                                              caacagAATCGAGATGGGAGG‑TAAAA‑AATAAAACGGAGGGAACTGACTTGACTGGAGATGGTAATGCTGGTCTGCGGTATTGAACTGTGAaggagagc                     >  1:725590/1‑95 (MQ=255)
                                                                              caacaaAATAAACATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc                   >  2:2290937/1‑100 (MQ=255)
                                                                                acaaAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 >  1:184171/1‑100 (MQ=255)
                                                                                acaaAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 <  2:3218912/100‑1 (MQ=255)
                                                                                acaaAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 <  2:1738462/100‑1 (MQ=255)
                                                                                 gaaaaTAAAGATGGGAGG‑T‑AAAGAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTGTGCTGTATTGAAATGTGAAGGAGGACGcaa                 >  1:1554479/2‑97 (MQ=255)
                                                                                 caaAATAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCAt                >  1:2160576/1‑100 (MQ=255)
                                                                                   aaaTAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGa              >  1:3209000/1‑100 (MQ=255)
                                                                                   aaaTAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGa              >  1:3208640/1‑100 (MQ=255)
                                                                                      tAAAGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAAc           >  1:908778/1‑100 (MQ=255)
                                                                                        naGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAAcgt         >  1:3035316/2‑98 (MQ=255)
                                                                                        aaGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtt         <  2:1981078/100‑1 (MQ=255)
                                                                                         aGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        <  1:135790/100‑1 (MQ=255)
                                                                                         aGATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        >  2:2399792/1‑100 (MQ=255)
                                                                                          gATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt       <  1:2302389/100‑1 (MQ=255)
                                                                                          gATGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt       <  1:3055436/100‑1 (MQ=255)
                                                                                           aTGGGAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTa      <  1:1038163/100‑1 (MQ=255)
                                                                                             gggAGG‑TAAAA‑AATGAAACGGTGGGAAGTGTCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt    <  1:807662/100‑1 (MQ=255)
                                                                                             gggAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt    <  1:2008713/100‑1 (MQ=255)
                                                                                               gAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg  >  1:24209/1‑100 (MQ=255)
                                                                                               gAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg  >  1:2504787/1‑100 (MQ=255)
                                                                                               gAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg  <  2:777554/100‑1 (MQ=255)
                                                                                               gAGG‑TAAAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg  <  2:1788117/100‑1 (MQ=255)
                                                                                                     |                                                                                               
AGGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGG‑T‑AAA‑AATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563414‑2563607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A