Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F142 I0 R1 175 91.2 4812830 94.5% 4548124 99.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,563,518:1 (A)5→6 100% intergenic (+401/‑74) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,563,5131.A97.9% 309.8 / ‑0.1 93intergenic (+396/‑79)yffP/yffQCPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base A (50/41);  total (51/42)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.27e-01

TGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑AAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563417‑2563607
                                                                                                 |                                                                                               
tGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑aaa                                                                                              >  1:2057040/1‑100 (MQ=255)
tGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑aaa                                                                                              <  1:2371881/100‑1 (MQ=255)
       tgtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑aaaa‑aatgaa                                                                                      <  1:201671/100‑6 (MQ=255)
         tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGAT‑aaaa‑aataaaa                                                                                     >  1:93372/1‑93 (MQ=255)
          gATGCAGATCGCTTTTTCCCGTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACg                                                                                    >  2:1461690/1‑100 (MQ=255)
             gCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTg                                                                                 >  2:2283395/1‑100 (MQ=255)
              cAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGt                                                                                  >  1:192493/1‑98 (MQ=255)
               aGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTggg                                                                               <  2:212469/100‑1 (MQ=255)
                   cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGt                                                                           >  1:978319/1‑100 (MQ=255)
                    gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAg                                                                            >  2:1655502/1‑98 (MQ=255)
                    gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTg                                                                          <  1:1911728/100‑1 (MQ=255)
                    acTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTg                                                                          <  1:928745/99‑1 (MQ=255)
                      tttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGc                                                                        <  1:952070/100‑1 (MQ=255)
                       ttttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCt                                                                       >  1:1841239/1‑100 (MQ=255)
                        tttCCCTTCAGAAATTTTTGTTTAATGGAATCAACGAAAGTCAGAAACCAACAACAAAATAAAGAAAAAAAATAAAAA‑ATGAAACGGTg                                                                                 <  2:1221004/89‑1 (MQ=255)
                         ttCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCttt                                                                     >  1:1805236/1‑100 (MQ=255)
                          tCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGATACTGTGGGAAGTGGCttt                                                                     <  2:209789/99‑1 (MQ=255)
                            ccTTCAGGCATTTTTTTTTTTTTTTTTTAACGAAAGACAGCTCCCAACAACAAAATAAAGATGGGGGGTAAAAA‑ATGAATCGTTTGGAAGTCTCTTTACt                                                                  >  2:746557/1‑100 (MQ=255)
                            ccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACt                                                                  >  1:1351874/1‑100 (MQ=255)
                             cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGCGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTg                                                                 >  1:413897/1‑100 (MQ=255)
                             cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTg                                                                 >  2:785033/1‑100 (MQ=255)
                               tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               >  1:2103496/1‑100 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               >  2:2345862/1‑99 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               <  1:2305192/99‑1 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTg                                                              >  1:1641051/1‑100 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTg                                                              >  2:4528/1‑100 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGAGAAGTGACTTTACTGGTg                                                              >  1:914503/1‑100 (MQ=255)
                                cAGGCATTTTTGTTTAATTCAATCAACAAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               >  2:349272/1‑99 (MQ=255)
                                    cATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                          >  2:686343/1‑100 (MQ=255)
                                      tttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTa                                                        >  2:96145/1‑100 (MQ=255)
                                       ttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAGATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa                                                       <  2:1678884/100‑1 (MQ=255)
                                       ttttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑AAGAAAAGGTGGGAAGTGGCTTTACAGGTGATGGTaa                                                       >  2:261232/1‑100 (MQ=255)
                                         ttGTTTAATTTAATCAACGAAAGGCAGTTAACAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGTTGGTAAGTGGCTTTACTGGTGATGGTAAt                                                      <  2:413085/99‑1 (MQ=255)
                                          tGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt                                                    <  1:2323936/100‑1 (MQ=255)
                                          tGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGt                                                    <  2:492154/100‑1 (MQ=255)
                                           gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   >  1:1984480/1‑100 (MQ=255)
                                           gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAAATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   <  1:1649578/100‑1 (MQ=255)
                                            tttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTg                                                  >  1:1919900/1‑100 (MQ=255)
                                              tAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGt                                                >  1:1061506/1‑100 (MQ=255)
                                               aaTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGtt                                               <  1:1282502/100‑1 (MQ=255)
                                               aaTTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGtt                                               >  2:1678360/1‑100 (MQ=255)
                                               aaTTCAATCAACGAAAGGCAGTTCCCAAAAACAAAATAAAGATGAGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTCTACTGGTGATGGTAATg                                                     >  2:2347557/1‑94 (MQ=255)
                                                 ttCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTg                                             <  2:716465/100‑1 (MQ=255)
                                                   caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg                                                 >  2:1604355/1‑94 (MQ=255)
                                                   caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt                                           >  1:782805/1‑100 (MQ=255)
                                                    aatcaaCGAAAGGCAGTTGCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  1:1144643/100‑1 (MQ=255)
                                                    aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  2:1357595/100‑1 (MQ=255)
                                                    aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  2:2358230/100‑1 (MQ=255)
                                                    aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          >  1:1596965/1‑100 (MQ=255)
                                                    aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          >  2:1619975/1‑100 (MQ=255)
                                                      tcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTa                                        >  1:207202/1‑100 (MQ=255)
                                                       gatctaaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt                                       <  2:1861069/95‑1 (MQ=255)
                                                       caaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAt                                       <  2:1863405/100‑1 (MQ=255)
                                                         aCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg                                     >  1:2254042/1‑100 (MQ=255)
                                                         aCGAAAGACAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg                                     <  2:861255/100‑1 (MQ=255)
                                                          cGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGTGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGa                                    >  2:2387687/1‑100 (MQ=255)
                                                            aaaGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAtagatc                                  >  1:1861090/1‑95 (MQ=255)
                                                             aaGGCAGTTCCCAACAACAAAAGAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt                                 <  2:119269/100‑1 (MQ=255)
                                                              aagCAGTTCCCAACAACAAAATAAAGATGAGAGGTAAAAA‑AGGAAACGGTGTGTAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGACCtg                                <  2:1446743/98‑1 (MQ=255)
                                                              aGGCAGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtg                                <  1:217843/100‑1 (MQ=255)
                                                                  aGTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGaa                            <  1:1059597/100‑1 (MQ=255)
                                                                   gTTCCCAACAATAAAATAAAGATTAGAGGTAAAAA‑ATGAAACTGTGGGAAGTGGCTGTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag                           <  2:2307501/100‑1 (MQ=255)
                                                                   gTTCCCAACAACAAAATAAAGATGGGGGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag                           <  1:457047/100‑1 (MQ=255)
                                                                   gTTCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAag                           <  2:93601/100‑1 (MQ=255)
                                                                    ttttcaacaacaaAATAATGATTGGAGGT‑AAAATATGAAACGGTGGGAAGTTGCTTTATTGGTTATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg                          <  2:1162802/96‑1 (MQ=255)
                                                                    ttCCCAACAACAAAATAAAGATGGGAGTTAAAAA‑ATGAATCGCTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg                          <  2:1686118/100‑1 (MQ=255)
                                                                    ttCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg                          <  1:2086054/100‑1 (MQ=255)
                                                                     tCCCAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACTGTAGGAAGTGGCTTTACTGTAGATGGTAATGTTGGTTTGCTGTATTGAACTGTGGag                           >  2:1303750/1‑98 (MQ=255)
                                                                      cccAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggag                        >  1:558008/1‑100 (MQ=255)
                                                                      cccAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTAGCTTTACTGGTGATGGTAATGATGGTTTGCTGTATGGAACTGTGAagga                         >  2:1263762/1‑99 (MQ=255)
                                                                       ccAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTTCTGTATTGAACTGTGAaggagg                       <  2:1018742/100‑1 (MQ=255)
                                                                       ccAACAACAAAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       >  2:751450/1‑100 (MQ=255)
                                                                        caacaacaaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAggagga                      >  2:3009/1‑100 (MQ=255)
                                                                        caacaacaaAATAAAGATGGGAGGT‑AAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGAc                     >  1:724540/1‑100 (MQ=255)
                                                                            aacaaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGcc                  >  2:351330/1‑100 (MQ=255)
                                                                             acaaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 >  1:244115/1‑100 (MQ=255)
                                                                             acaaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 >  2:752345/1‑100 (MQ=255)
                                                                             acaaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 <  2:1351860/100‑1 (MQ=255)
                                                                              caaAATAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCAt                >  2:1272678/1‑100 (MQ=255)
                                                                               aaaaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCAt                <  1:830750/99‑1 (MQ=255)
                                                                               aaaaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATg               >  1:1146344/1‑100 (MQ=255)
                                                                               aaaaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATg               <  1:179343/100‑1 (MQ=255)
                                                                                aaaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGAGGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 >  2:1422963/1‑97 (MQ=255)
                                                                                 aaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa             <  1:1347660/100‑1 (MQ=255)
                                                                                 aaTAAAGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa             >  2:880682/1‑100 (MQ=255)
                                                                                     aaGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTAATGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtt         >  2:79772/1‑100 (MQ=255)
                                                                                      aGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        >  2:2087094/1‑100 (MQ=255)
                                                                                      aGATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        >  2:464187/1‑100 (MQ=255)
                                                                                       gATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt       <  2:2164470/100‑1 (MQ=255)
                                                                                       gATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt       >  1:450463/1‑100 (MQ=255)
                                                                                       gATGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACGTGTGATGGTAATGTTTGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        <  2:2392155/99‑1 (MQ=255)
                                                                                        aTGGGAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTa      <  2:1379298/100‑1 (MQ=255)
                                                                                        aTGCGAGGTAAAAA‑ATGAAATGGGGGCAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTGTTa      <  2:2069564/100‑1 (MQ=255)
                                                                                          gggAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt    <  1:682781/100‑1 (MQ=255)
                                                                                           ggAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATc   >  1:1174941/1‑100 (MQ=255)
                                                                                           ggAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATc   <  2:978308/100‑1 (MQ=255)
                                                                                            gAGGTAAAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCg  <  2:176248/100‑1 (MQ=255)
                                                                                                 |                                                                                               
TGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGT‑AAAA‑ATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563417‑2563607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A