Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F212 I0 R1 246 122.0 6097616 93.1% 5676880 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,563,518:1 (A)5→6 100% intergenic (+401/‑74) yffP → / → yffQ CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,563,5131.A92.8% 304.1 / 16.7 97intergenic (+396/‑79)yffP/yffQCPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base . (4/3);  new base A (41/49);  total (45/52)
Fisher's exact test for biased strand distribution p-value = 7.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 110 total aligned reads displayed.

GGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563415‑2563607
                                                                                                     |                                                                                               
ggTGAATTTTGTGATGCAGATCGCTTTTTTTTTTTATTTATTTTTGTTTAATTCAATCAACAAAAGACAGTTCCCAACAACAATATAAAGATGGGA‑GG‑T‑a                                                                                                >  2:1489855/1‑100 (MQ=255)
ggTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a                                                                                                >  2:970812/1‑100 (MQ=255)
  tGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTAAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aa                                                                                             >  1:34241/1‑100 (MQ=255)
    aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaca                                                                                           <  1:2044657/100‑3 (MQ=255)
    aaTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaa                                                                                           <  1:1037956/100‑1 (MQ=255)
     aTTTTGTGATGCAGATCGCTTTTTCTCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaa                                                                                          >  2:1141620/1‑99 (MQ=255)
     aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaa                                                                                          >  1:2173839/1‑99 (MQ=255)
     aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaa                                                                                          >  1:553222/1‑99 (MQ=255)
     aTTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaa                                                                                          >  2:2496169/1‑99 (MQ=255)
      ttttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaat                                                                                         >  1:1449456/1‑98 (MQ=255)
       tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaatg                                                                                        <  1:1118219/100‑4 (MQ=255)
       tttGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTAAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑a‑aaaaatg                                                                                        <  2:1706177/100‑4 (MQ=255)
          gtgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAAGCAATTCCCAAAAAAAAAATAAAGATGGGA‑GA‑A‑A‑AAAATGAAAc                                                                                     >  1:504201/1‑100 (MQ=255)
           tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAAc                                                                                     >  2:387224/1‑100 (MQ=255)
           tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGAAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAAc                                                                                     <  2:159521/100‑1 (MQ=255)
           tgATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAAGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAAc                                                                                     >  1:2610152/1‑100 (MQ=255)
            gATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCATTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGaaa                                                                                      >  1:1221504/1‑98 (MQ=255)
            gATGCAGATCGCTTTTTCCCTACAGGCATATATGTTTAATTAAATAAATGAAAGGCAATTCCAAACAACAAAAAAAAGATAGCA‑CT‑T‑a‑aaaaaacaaac                                                                                    >  2:2553974/1‑92 (MQ=255)
              tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGt                                                                                  >  2:1983142/1‑100 (MQ=255)
              tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGt                                                                                  >  2:1926580/1‑100 (MQ=255)
              tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGt                                                                                  >  1:2265099/1‑100 (MQ=255)
              tGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑A‑AAAATGAAACGGTg                                                                                 <  2:2963023/100‑1 (MQ=255)
               gCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTg                                                                                 <  2:553219/100‑1 (MQ=255)
                cAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTgg                                                                                <  2:1431258/100‑1 (MQ=255)
                cAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTgg                                                                                <  1:2600214/100‑1 (MQ=255)
                cAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTgg                                                                                >  2:2431511/1‑100 (MQ=255)
                  gATCGCTTTTTTCCTTCAAGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAATGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGa                                                                              <  2:1893417/100‑1 (MQ=255)
                  gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTTAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGa                                                                              <  1:1047861/100‑1 (MQ=255)
                  gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGa                                                                              <  2:2353315/100‑1 (MQ=255)
                  gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGa                                                                              <  1:1868404/100‑1 (MQ=255)
                  gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTACCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGa                                                                              >  1:111893/1‑100 (MQ=255)
                  gATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAATTCACAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACAGTAGGa                                                                              >  2:4566/1‑100 (MQ=255)
                    tCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAg                                                                            <  2:1178777/100‑1 (MQ=255)
                     cGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGt                                                                           >  1:966275/1‑100 (MQ=255)
                      gCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTg                                                                          <  1:2567518/100‑1 (MQ=255)
                         ttttCCCTTCAGGCATTTTTGTTTAATACAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCt                                                                       >  2:17655/1‑100 (MQ=255)
                             cccTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTAc                                                                   <  1:2619252/100‑1 (MQ=255)
                               cTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTg                                                                 <  1:2027104/100‑1 (MQ=255)
                                 tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTgg                                                                >  1:1185512/1‑99 (MQ=255)
                                 tCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGt                                                               <  2:1884366/100‑1 (MQ=255)
                                   aGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGa                                                             <  1:871618/100‑1 (MQ=255)
                                    ggCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGAGGG‑A‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGa                                                             >  2:1710247/1‑99 (MQ=255)
                                     gCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATg                                                           <  1:1555488/100‑1 (MQ=255)
                                      cATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                          <  2:2947507/100‑1 (MQ=255)
                                       aTTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAATAAAATAAAGGTGGGAGGG‑T‑A‑AAAATGAAACGGTTTGAAGTGTCTTTACTGGTGATGGt                                                         >  1:1313883/1‑100 (MQ=255)
                                        ttttttttTAATTCAATCAACGAAAGGCAGTTCACAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATgg                                                          <  2:1834792/98‑1 (MQ=255)
                                         ttttGTTTAATTCAATCAACGAAAGGTAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTaa                                                       <  1:71800/100‑1 (MQ=255)
                                          tttGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAt                                                      <  2:166057/100‑1 (MQ=255)
                                             gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   >  2:545557/1‑100 (MQ=255)
                                             gTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGtt                                                   >  1:2260791/1‑100 (MQ=255)
                                               ttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg                                                 <  2:930324/100‑1 (MQ=255)
                                               ttAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTgg                                                 <  1:2841673/100‑1 (MQ=255)
                                                tAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGAGGGAAGTGACTTTACTGGAGATGGTAATGTTGGt                                                >  1:517920/1‑100 (MQ=255)
                                                 aaTTCAATCAATGAAAGGTAGTTTCCAACTAGATTATAAAGGTGGGT‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGGGATGGTAATGTTGGtt                                               <  1:381845/100‑1 (MQ=255)
                                                    tcaatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGc                                            <  2:1812017/100‑1 (MQ=255)
                                                     caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt                                           >  1:1565053/1‑100 (MQ=255)
                                                     caatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCt                                           >  1:2513209/1‑100 (MQ=255)
                                                      aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAATATTGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGCTGATGGTAATGTTGGTTTGCTg                                          <  2:559144/100‑1 (MQ=255)
                                                      aatcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          <  1:368785/100‑1 (MQ=255)
                                                       atcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTg                                          >  2:1254446/1‑99 (MQ=255)
                                                       atcaaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGt                                         >  1:1200427/1‑100 (MQ=255)
                                                        tcaaCGAAAGGCAGTTCCTAATAACAAAATAAAGATGGGA‑TG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGcg                                           <  1:1803226/97‑2 (MQ=255)
                                                          aaCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTAtt                                      >  2:1050119/1‑100 (MQ=255)
                                                           aCGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg                                     <  1:72562/100‑1 (MQ=255)
                                                           aCGAAAGGCAGTGCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTg                                     >  1:2001360/1‑100 (MQ=255)
                                                            cGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGa                                    >  1:2322897/1‑100 (MQ=255)
                                                               aaGGCAGTTCCCAACAACAAAATAAAGATGTGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt                                 <  2:505342/100‑1 (MQ=255)
                                                               aaGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACt                                 >  1:1737075/1‑100 (MQ=255)
                                                                ccgatcttCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtg                                <  1:1633981/94‑1 (MQ=255)
                                                                 ggCAGTTCCCAACAACAAAATAAAGATGGGA‑GGAA‑A‑AAAATGAAACGGTGGGAAGTGGCATTACTGGTGATAGTAATGTTGGTTTGCTGTATTGAACtgt                               >  2:1491997/1‑100 (MQ=255)
                                                                  gCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTTATGGTAATGTTGGTTTGCTGTATTGAACtgtg                              <  2:229892/100‑1 (MQ=255)
                                                                  gCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTAGCTTTACTGGTGATGATAATGTTGGTGTGCTGTATTGAACtgtg                              >  2:379279/1‑100 (MQ=255)
                                                                   cAGTTCCCAACAACAAAATAAAGATAAAA‑AA‑AAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgtg                              <  2:2660994/99‑1 (MQ=255)
                                                                     gTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAagg                          <  1:1164955/100‑1 (MQ=255)
                                                                       tCCCAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACtgagatcgg                         >  2:1633962/1‑93 (MQ=255)
                                                                        cccAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggag                        >  2:1540849/1‑100 (MQ=255)
                                                                         ccAACAACAAAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAaggagg                       >  2:629246/1‑100 (MQ=255)
                                                                           aacaacaaAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGAc                     <  1:2974659/100‑1 (MQ=255)
                                                                             caacaaAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc                   >  1:763061/1‑100 (MQ=255)
                                                                             caacaaAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGc                   >  1:2667757/1‑100 (MQ=255)
                                                                              aacaaAATAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGcc                  <  1:2761022/100‑1 (MQ=255)
                                                                               acaaAATAAAGATGGGA‑GG‑TAA‑AAAATTAAACGGTGGTAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCa                 <  1:1632254/100‑1 (MQ=255)
                                                                                  aaaTAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGa              <  2:746280/100‑1 (MQ=255)
                                                                                   aaTAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa             >  1:1032789/1‑100 (MQ=255)
                                                                                   aaTAAAGATAGGA‑GG‑T‑AGAAAATGAAACGGTGGGAAGTGGCTTTACTGGTGAGGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGaa             <  2:2827817/100‑1 (MQ=255)
                                                                                    aTAAAGATAGGA‑TG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGTTTTGCTGTATTGCACTGTGAAGGAGGACGCTATGaa             <  2:2831970/99‑1 (MQ=255)
                                                                                     tAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAAc           >  1:46345/1‑100 (MQ=255)
                                                                                     tAAAGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAAAGTTGGTTTGCTGTATTGAAATGTGAAGGAGGACGCCATGAAAc           >  1:1980825/1‑100 (MQ=255)
                                                                                      aaaGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACt          <  2:929349/100‑1 (MQ=255)
                                                                                      aaaGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACt          >  1:1737593/1‑100 (MQ=255)
                                                                                       aaGATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtt         <  2:1830965/100‑1 (MQ=255)
                                                                                        aGATGTGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATTGTAATGTTTGTTTGCTTTATTGAACTGTGAAGGAGTACGCCATGAAACttt        <  2:1439960/100‑1 (MQ=255)
                                                                                        aGATGGGA‑GG‑TAA‑AAAATGAAACGGTGTGAAGTTGCTTTACTTGTTATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACttt        <  1:386435/100‑1 (MQ=255)
                                                                                         gATGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACtttt       >  1:2915040/1‑100 (MQ=255)
                                                                                           tGGGA‑GT‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTTATGGTAATGTTTTTTTGCTGTATTGTTCTTTGAAGGAGGACGCCATGAAACTTTTaa     <  2:3034402/100‑1 (MQ=255)
                                                                                           tGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTan     <  1:2095519/100‑2 (MQ=255)
                                                                                           tGGGA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTaa     <  1:1093876/100‑1 (MQ=255)
                                                                                            gggA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTACTGTAATGAACTGTGAAGGAGGACGCCATGAAACTTTTAAt    >  1:2456921/1‑100 (MQ=255)
                                                                                             ggA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATc   >  1:350125/1‑100 (MQ=255)
                                                                                             ggA‑GG‑TAA‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTAAACTGTAAAGGAGGACGACATGAAACTTTTAAt    >  1:395488/1‑99 (MQ=255)
                                                                                                     |                                                                                               
GGTGAATTTTGTGATGCAGATCGCTTTTTCCCTTCAGGCATTTTTGTTTAATTCAATCAACGAAAGGCAGTTCCCAACAACAAAATAAAGATGGGA‑GG‑T‑A‑AAAATGAAACGGTGGGAAGTGGCTTTACTGGTGATGGTAATGTTGGTTTGCTGTATTGAACTGTGAAGGAGGACGCCATGAAACTTTTAATCG  >  NC_000913/2563415‑2563607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A