Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| MC JC |
NC_000913 |
4,242,942 |
Δ66 bp |
100% |
coding (510‑575/891 nt) |
malG ← |
maltose transporter subunit |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
4242942 |
4243007 |
66 |
168 [0] |
[4] 172 |
malG |
maltose transporter subunit |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4242941 | 0 (0.000) | 145 (1.020) |
88/164 |
NT |
99.7% |
coding (576/891 nt) |
malG |
maltose transporter subunit |
| ? | NC_000913 |
4243008 = |
1 (0.010) | coding (509/891 nt) |
malG |
maltose transporter subunit |
GATK/CNVnator alignment
N/A
