Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F56 I0 R1 215 141.2 6785521 95.3% 6466601 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,707,029 A→G 56.7% V37V (GTA→GTG)  rsxC → SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,707,0290AG56.7% 37.9 / 111.8 97V37V (GTA→GTG) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base A (15/26);  new base G (23/31);  total (40/57)
Fisher's exact test for biased strand distribution p-value = 6.73e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.51e-01

TCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCC  >  NC_000913/1706932‑1707127
                                                                                                 |                                                                                                  
tctcTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGcc                                                                                                  <  2:785238/100‑1 (MQ=255)
  tctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGcccc                                                                                                <  2:468781/100‑1 (MQ=255)
  tctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGcccc                                                                                                <  2:797515/100‑1 (MQ=255)
   ctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCt                                                                                               >  2:3301547/1‑100 (MQ=255)
    tGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCAGCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTg                                                                                              <  1:909452/100‑1 (MQ=255)
      cagtCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGgc                                                                                            <  2:2320433/97‑1 (MQ=255)
      cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGgc                                                                                            <  2:2299826/100‑1 (MQ=255)
      cATTCAGAAAAAATAAAATCCGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGgc                                                                                            <  1:2045528/100‑1 (MQ=255)
       aTTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgc                                                                                            <  1:2365187/99‑1 (MQ=255)
         tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCa                                                                                         <  2:3105331/100‑1 (MQ=255)
          cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAg                                                                                        <  1:329341/100‑1 (MQ=255)
          cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCa                                                                                         <  1:652412/99‑1 (MQ=255)
           aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGc                                                                                       >  2:3284587/1‑100 (MQ=255)
           aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGc                                                                                       >  1:2529920/1‑100 (MQ=255)
            gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCg                                                                                      >  1:795676/1‑100 (MQ=255)
            gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACAGGATATGAAAACCCAGTCCAACGGTACACCCCGGCGCCAGGTGCCCCTGGCGCAGCg                                                                                      >  1:3058501/1‑100 (MQ=255)
            gAAAAAAGAAAGTCTGGGATTTCAACGGCGGCAGCCATCCCCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAggg                                                                                      <  1:820721/100‑3 (MQ=255)
             aaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCg                                                                                      <  1:1528798/99‑1 (MQ=255)
             aaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGt                                                                                     >  2:2022653/1‑100 (MQ=255)
             aaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAgggg                                                                                     <  2:260097/100‑4 (MQ=255)
               aaaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGttt                                                                                   <  2:1824016/100‑1 (MQ=255)
                aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGCGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCCGCGt                                                                                     >  1:657951/1‑97 (MQ=255)
                 aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTg                                                                                 >  1:85678/1‑100 (MQ=255)
                 aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTg                                                                                 >  2:967144/1‑100 (MQ=255)
                  ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCGGGTGCCCCTGGCGCAGCGTTTTGt                                                                                >  1:2482971/1‑100 (MQ=255)
                  ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGt                                                                                >  2:2738060/1‑100 (MQ=255)
                  ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGt                                                                                <  2:2577771/100‑1 (MQ=255)
                   taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGTACCTGGCGCAggg                                                                                      <  1:1022038/93‑3 (MQ=38)
                     aaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTAt                                                                             <  2:502191/100‑1 (MQ=255)
                     aaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTAt                                                                             <  1:79916/100‑1 (MQ=255)
                       ctCTAGGATTTCAACGGCGGCATCCATCCACCGAAGATGAAAACTCAGTTGATCGGTACACCACTTCGACAGATCCCCCTGGCGCAGCGTTATGCTATTc                                                                           >  1:317773/2‑100 (MQ=255)
                       atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTc                                                                           >  2:1534260/1‑100 (MQ=255)
                         cTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCa                                                                         >  2:508538/1‑100 (MQ=255)
                          tGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCAc                                                                        <  2:1574677/100‑1 (MQ=255)
                                ttCAACGGCGGCGTCCATCCCCCGGACATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGAAGCGTTTTGTTATTCCACTGAAAc                                                                  <  1:2364567/100‑1 (MQ=255)
                                 tCAACGGCGTCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAc                                                                  <  1:2220962/99‑1 (MQ=255)
                                 tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACa                                                                 >  2:1296581/1‑100 (MQ=255)
                                 tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGGCCAACGGTACACCCCTGCTCCAGGTTCCCCTGCCGCAGTGTTTTGTTATCACACTgcacc                                                                  >  1:1569370/1‑95 (MQ=255)
                                    aCGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                              <  2:156984/100‑1 (MQ=255)
                                    aCGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGCTTTGTTATTCCACTGACACAGc                                                               >  1:2310707/1‑99 (MQ=255)
                                     tccgatcttccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCat                                                             <  2:2022121/92‑1 (MQ=255)
                                     cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCACAGCGTCTTGTTATTCCACTGAAACAGcct                                                             >  1:1309704/1‑98 (MQ=255)
                                     cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACAACACTGCGCCAGGTACCCCTGGCGCAGCGCTTTGTTATTCCACGGAAACAgaa                                                              >  1:1396624/1‑97 (MQ=255)
                                     cggcggCATCCACCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCat                                                             <  2:2099760/100‑1 (MQ=255)
                                      gtcggcATCCATCCACCGGGGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCata                                                            <  2:403147/98‑1 (MQ=255)
                                       gcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCatat                                                           >  2:3310180/1‑100 (MQ=255)
                                            atccatccACCGGAGATGAAAACCCAGTCTAACGGTACACCCATGAGCCAGGTACCCCTGGCGCAGCGTTTGGTTATTCCACTGAAACAGCATCTTGgcg                                                      <  1:3196258/100‑1 (MQ=255)
                                             tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCatagatcgga                                                     >  1:2022107/1‑93 (MQ=255)
                                              ccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCt                                                    >  2:805781/1‑100 (MQ=255)
                                              ccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCt                                                    <  1:1196924/100‑1 (MQ=255)
                                               catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTg                                                   >  2:559805/1‑100 (MQ=255)
                                                 tcccCCGGAGATGAAAACCCAGTCCAACGGTACTCCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGaa                                                 <  1:2300740/100‑1 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                               >  1:1570868/1‑100 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                               <  2:3249133/100‑1 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                               >  1:23014/1‑100 (MQ=255)
                                                    aCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTCGCGCTGAAGGt                                              >  1:1217737/1‑100 (MQ=255)
                                                     ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                             >  2:263622/1‑100 (MQ=255)
                                                     ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                             <  2:2139225/100‑1 (MQ=255)
                                                       ggAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAg                                           >  1:1719915/1‑100 (MQ=255)
                                                       ggAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAg                                           <  1:2444103/100‑1 (MQ=255)
                                                       ggAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAg                                           <  1:2444149/100‑1 (MQ=255)
                                                        gagaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                          <  2:1741379/100‑1 (MQ=255)
                                                        gagaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                          <  2:1206083/100‑1 (MQ=255)
                                                          gaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtg                                        <  2:327257/100‑1 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCATCGTCTTGTTATTCCACTGAAACATCCTATTGGCACTGAAAGTAAGttat                                       >  2:751181/1‑97 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                      >  2:627338/1‑100 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                      <  2:191268/100‑1 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                      <  2:2529940/100‑1 (MQ=255)
                                                            tGAAAACACAGTCCAACGGTACACCCCTGCGCCAGCTGCCCCTCGCGCAGCGCTTTTTTATTCCACTGTTACAGCAGTTGGGCGCTGAAGGTGAGTtgt                                       >  1:624533/1‑99 (MQ=255)
                                                             gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGc                                     <  2:170570/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                    <  2:2500365/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                    <  2:1370209/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                    <  2:1043512/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                    <  1:554387/100‑1 (MQ=255)
                                                                aaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGtt                                  <  2:1570875/100‑1 (MQ=255)
                                                                      gTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                            <  1:1199971/100‑1 (MQ=255)
                                                                        ccAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCgg                          >  1:1307057/1‑100 (MQ=255)
                                                                         cAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGc                         <  2:2627035/100‑1 (MQ=255)
                                                                         cAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGc                         <  2:3324526/100‑1 (MQ=255)
                                                                         cAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTTTTTTTTTTTAACACCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                            >  1:3110143/1‑97 (MQ=255)
                                                                         cAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGc                         <  2:2770283/100‑1 (MQ=255)
                                                                          aaCGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                        <  2:245133/100‑1 (MQ=255)
                                                                          aaCGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                        <  1:1577126/100‑1 (MQ=255)
                                                                          aaCGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                        >  1:564452/1‑100 (MQ=255)
                                                                           aCGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGa                       <  1:2554192/100‑1 (MQ=255)
                                                                                  acCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTa                <  2:3058177/100‑1 (MQ=255)
                                                                                   ccccTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt               >  1:1083458/1‑100 (MQ=255)
                                                                                   ccccTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATACCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt               >  1:2093810/1‑100 (MQ=255)
                                                                                    cccTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTGGTGCGTTAGCGTCGGCGATAAAGTAtt              >  1:3366209/1‑100 (MQ=255)
                                                                                     gcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg             >  2:927460/2‑100 (MQ=255)
                                                                                      cTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTAGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg             >  1:2128462/1‑99 (MQ=255)
                                                                                         cgcCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGcgcg         <  1:1274028/100‑1 (MQ=255)
                                                                                          gcCATGTGCCCCTGGCGCAGCGTTTTGTTATCCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg        <  1:1206509/100‑1 (MQ=255)
                                                                                          gcCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg        <  1:483413/100‑1 (MQ=255)
                                                                                            cAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGcc      >  2:2473863/1‑100 (MQ=255)
                                                                                            cAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGcc      <  2:900700/100‑1 (MQ=255)
                                                                                                tACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGcc  <  1:1033806/100‑1 (MQ=255)
                                                                                                 |                                                                                                  
TCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCC  >  NC_000913/1706932‑1707127

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A