Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F56 I0 R1 312 170.3 8276235 93.7% 7754832 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,707,029 A→G 28.9% V37V (GTA→GTG)  rsxC → SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,707,0290AG28.9% 155.1 / 78.3 112V37V (GTA→GTG) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base A (38/41);  new base G (18/14);  total (56/56)
Fisher's exact test for biased strand distribution p-value = 5.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 113 total aligned reads displayed.

TCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCCG  >  NC_000913/1706932‑1707128
                                                                                                 |                                                                                                   
tctcTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGcc                                                                                                   <  2:2662961/100‑1 (MQ=255)
 ctctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTAccc                                                                                                  >  2:2462306/1‑100 (MQ=255)
  tctGCATTCAGAAAAAATAAAATCTGGGATTTCCACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCGGGTAcccc                                                                                                 >  2:1790148/1‑100 (MQ=255)
  tctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTAcccc                                                                                                 <  2:1162578/100‑1 (MQ=255)
  tctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTAcccc                                                                                                 >  1:2194330/1‑100 (MQ=255)
    tGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTg                                                                                               >  1:3262314/1‑100 (MQ=255)
    tGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTg                                                                                               >  1:2288248/1‑100 (MQ=255)
    tGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTg                                                                                               <  1:3495876/100‑1 (MQ=255)
     ncATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTgg                                                                                              >  1:2136169/2‑100 (MQ=255)
     gCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTTCAACGGTACACCCCTGCGCCAGGTGCCCCTgg                                                                                              <  1:3921936/100‑1 (MQ=255)
      cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgc                                                                                             <  2:1073043/100‑1 (MQ=255)
       nttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgcg                                                                                            >  2:3333215/2‑100 (MQ=255)
       ataaaGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgcg                                                                                            <  2:1158306/96‑1 (MQ=255)
        ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGgcgc                                                                                           >  1:838125/1‑100 (MQ=255)
         tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCa                                                                                          >  2:562891/1‑100 (MQ=255)
         tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGAGTACCTGGCGCa                                                                                          <  1:607556/100‑1 (MQ=255)
          cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAg                                                                                         >  1:1554979/1‑100 (MQ=255)
            gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCg                                                                                       >  1:1700904/1‑100 (MQ=255)
            gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCAACCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGCCGCAGCg                                                                                       >  2:2204288/1‑100 (MQ=255)
             aaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCgn                                                                                      <  1:1748489/100‑2 (MQ=255)
              aaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGtt                                                                                     >  1:1359834/1‑100 (MQ=255)
               aaaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAggggtg                                                                                    <  1:751236/100‑6 (MQ=255)
                 aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACATCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTg                                                                                  <  1:1136507/100‑1 (MQ=255)
                 aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTg                                                                                  <  1:153507/100‑1 (MQ=255)
                 aagaagatCTGTGACTTCCACGGCGGCCCCCCTCCACCGGAGATGATAGCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTg                                                                                  <  2:1238928/94‑1 (MQ=255)
                   taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTg                                                                                  >  2:3491560/1‑98 (MQ=255)
                   taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGtt                                                                                <  1:3755623/100‑1 (MQ=255)
                      aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCTAACAGTACACCCCTCCTCCAGGTACCCCTGGCGAAGCGTCTTGTTAt                                                                              >  2:2052539/1‑99 (MQ=255)
                      aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTAtt                                                                             <  2:3160498/100‑1 (MQ=255)
                       atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTc                                                                            >  1:213032/1‑100 (MQ=255)
                       atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTc                                                                            >  1:4064143/1‑100 (MQ=255)
                        tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTcc                                                                           <  1:3721444/100‑1 (MQ=255)
                         cTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCa                                                                          <  1:2744060/100‑1 (MQ=255)
                          tGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCAc                                                                         <  2:2078172/100‑1 (MQ=255)
                           gggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTCGCGCAGCGATTTGTTATTCCACt                                                                        >  2:729970/1‑100 (MQ=255)
                            ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTg                                                                       <  2:1587698/100‑1 (MQ=255)
                            ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTg                                                                       <  2:2503985/100‑1 (MQ=255)
                            ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTg                                                                       >  1:1548224/1‑100 (MQ=255)
                              aTTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGaa                                                                     <  2:1934566/100‑1 (MQ=255)
                              aTTTCAACGGCGGCATCCATCCACCGGAGAAGCAAACCCAGTCCAACTGTACACCCCCGCGACAAATACCTCTGGCCCCGCGTTTTGTTATTcc                                                                           >  2:1740743/1‑94 (MQ=255)
                               ttgcAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCAc                                                                         <  2:1828656/92‑1 (MQ=255)
                                  cAACTGCGGCATCCATCCACCGAAGATGAAACCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAc                                                                   <  2:3658378/98‑1 (MQ=255)
                                    aCGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                               <  1:672274/100‑1 (MQ=255)
                                    aCGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                               <  1:1771692/100‑1 (MQ=255)
                                      ggcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCata                                                             >  1:2854271/1‑100 (MQ=255)
                                      ggcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCata                                                             <  1:3374460/100‑1 (MQ=255)
                                               catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTg                                                    >  2:854506/1‑100 (MQ=255)
                                               catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCAGATTGGCGCTg                                                    >  1:2558259/1‑100 (MQ=255)
                                                  ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAg                                                 <  1:1031578/100‑1 (MQ=255)
                                                  ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAACATATTGGCGCTGAAg                                                 <  2:2432357/100‑1 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCGGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                                >  1:2796620/1‑100 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                                >  1:2481643/1‑100 (MQ=255)
                                                   caCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAgg                                                >  1:2963201/1‑100 (MQ=255)
                                                     ccGGAGATGCTAACCCAGTCCACCGCTCCGCCCCGGCGGCAGGTTCCCCGGGCGCAGCGTTTTGTTAGTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                              <  2:2711318/100‑1 (MQ=255)
                                                     ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                              <  1:212321/100‑1 (MQ=255)
                                                     ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                              >  1:2036419/1‑100 (MQ=255)
                                                      cGGCGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGa                                             <  2:591562/100‑1 (MQ=255)
                                                         agaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                           <  1:3896983/99‑1 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCGCCTGGCGCAGCGTTTTGTTATTCCAATGAAAAAGCATATTGGCGCTGAAGGTGAGTtgtg                                       >  1:1843805/1‑100 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                       <  2:2066173/100‑1 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTCTGTCATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                       >  2:2777757/1‑100 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCCGCGTTTTGTTATTCCACTGCAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                       >  2:3718114/1‑100 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                       >  2:1756424/1‑100 (MQ=255)
                                                            tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                       <  1:2649481/100‑1 (MQ=255)
                                                             gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGCAACAGCATATTGGCGCTGAAGGTGAttt                                          >  2:1348339/1‑96 (MQ=255)
                                                             gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCCCTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGc                                      >  2:2157534/1‑100 (MQ=255)
                                                             gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGc                                      >  1:137308/1‑100 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                     <  2:1095495/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                     <  2:1338363/100‑1 (MQ=255)
                                                              aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                     <  1:3978445/100‑1 (MQ=255)
                                                                  cccAGTCCGACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAATCACCATATTGGCGCTGAAGGTGAGTTGTGCGtt                                   <  2:2720043/98‑1 (MQ=255)
                                                                  cccAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAg                                 >  1:2848573/1‑100 (MQ=255)
                                                                    cAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATCTTGGCGCTGAAGGTGAGTTGTGCGTTAGCg                               >  2:1277717/1‑100 (MQ=255)
                                                                    cAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCg                               >  1:344730/1‑100 (MQ=255)
                                                                       tCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCg                            >  2:3062822/1‑100 (MQ=255)
                                                                        ccAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCg                            <  1:383195/99‑1 (MQ=255)
                                                                         cAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGc                          <  1:2692595/100‑1 (MQ=255)
                                                                          aaCGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                         >  2:1765872/1‑100 (MQ=255)
                                                                          aaCGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                         <  2:838119/100‑1 (MQ=255)
                                                                           aCGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCg                         >  1:3334556/1‑99 (MQ=255)
                                                                             ggTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATa                      <  1:1071016/100‑1 (MQ=255)
                                                                              gttcacCCCTGCGCCAGGTACCCCTGGCGCAGCGTTGTGTTATTCCACTGAAACAGCGTCTTGGCGCTGAAGGTGTGTTGTGCGTTAGCGTCGGc                          <  2:2132752/92‑1 (MQ=255)
                                                                                  acCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTa                 <  1:1082707/100‑1 (MQ=255)
                                                                                   ccccTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt                >  1:2366326/1‑100 (MQ=255)
                                                                                     gcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg              >  1:1319614/2‑100 (MQ=255)
                                                                                     ccTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAttn              <  1:3361635/100‑2 (MQ=255)
                                                                                      cTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc             <  1:1959729/100‑1 (MQ=255)
                                                                                       tGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgcg            >  2:334735/1‑100 (MQ=255)
                                                                                        gcgcCAGGTGCCCCTGGCGCAGCGTTTTGTTTTTTTTTTTAAACACCATATTGGCGCTGAAGGTGACTTCTTCGTTAGCGTCGGCGATAAAGTATTtcgc           >  2:3558811/1‑100 (MQ=255)
                                                                                          gcCGGGTGCACCTGGCGCAGCGTTTTGTTATTCAACTGAAACAGCATATTGGCGATGAAGGTGAGTTGTGCGTTAGCGTCGGAAATAAAGTATTGCGCgg         <  2:3714778/100‑1 (MQ=255)
                                                                                          gcCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg         >  1:3383084/1‑100 (MQ=255)
                                                                                          gcCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg         <  2:2933486/100‑1 (MQ=255)
                                                                                          gcCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg         >  1:2675413/1‑100 (MQ=255)
                                                                                          gcCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg         <  1:3573299/100‑1 (MQ=255)
                                                                                          gcCAGGTACCCCTGGAGCAGCGTTTTGTTATTCCACTGAAACAGCATATTTGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAGAAAGTATTgc             <  2:3569068/96‑1 (MQ=255)
                                                                                           ccAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGc        >  2:1074043/1‑100 (MQ=255)
                                                                                            cAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGcc       <  1:1278461/100‑1 (MQ=255)
                                                                                            cAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGcc       <  1:373680/100‑1 (MQ=255)
                                                                                                tACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGcc   <  1:2709593/100‑1 (MQ=255)
                                                                                                 aCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCCg  <  1:3531834/100‑1 (MQ=255)
                                                                                                 |                                                                                                   
TCTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCCAGCCG  >  NC_000913/1706932‑1707128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A