Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I0 R1 328 102.7 5123138 93.4% 4785010 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,707,029 A→G 100% V37V (GTA→GTG)  rsxC → SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,707,0290AG98.9% 300.9 / ‑4.8 91V37V (GTA→GTG) rsxCSoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex
Reads supporting (aligned to +/- strand):  ref base A (0/1);  new base G (41/49);  total (41/50)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.41e-01

CTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCC  >  NC_000913/1706933‑1707123
                                                                                                |                                                                                              
ctctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGccc                                                                                             >  2:80386/1‑100 (MQ=255)
ctctGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGccc                                                                                             >  2:80320/1‑100 (MQ=255)
     cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgc                                                                                        <  1:47425/100‑1 (MQ=255)
      aTTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgcg                                                                                       <  2:576025/100‑1 (MQ=255)
      aTTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCGGCGCCAGGTGCCCCTgg                                                                                         >  2:285616/1‑98 (MQ=255)
       ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGgcgc                                                                                      <  1:1115385/100‑1 (MQ=255)
         cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAg                                                                                    <  1:196231/100‑1 (MQ=255)
         cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAg                                                                                    <  1:1053160/100‑1 (MQ=255)
          aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGc                                                                                   >  1:272000/1‑100 (MQ=255)
          aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAgg                                                                                   <  1:524484/100‑2 (MQ=255)
           gAAAAAATAAAATCTGGGATTTCACCGGCGGCATCCCTCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAgg                                                                                   <  2:69300/99‑2 (MQ=255)
           gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCg                                                                                  >  2:519683/1‑100 (MQ=255)
           gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGAGGAAAACCCAGTCCAACGGTACACCACTGCGCAAGGTGCCCCTGGCGCAGCg                                                                                  >  2:763202/1‑100 (MQ=255)
            aaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCCCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGGCACCTGGCGCAgggg                                                                                 <  2:2022100/100‑4 (MQ=255)
             aaaaaTAAAGCCTGGGAATGCAAAGGCGCGATCCGTTCACTCGAGAGGCGCCCCCCATCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGt                                                                                 <  2:314116/99‑1 (MQ=255)
              aaaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGttt                                                                               >  1:1945283/1‑100 (MQ=255)
               aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGtttt                                                                              <  1:549805/100‑1 (MQ=255)
                aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTg                                                                             >  1:54533/1‑100 (MQ=255)
                 ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGt                                                                            <  1:1948689/100‑1 (MQ=255)
                 ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGt                                                                            <  1:1965361/100‑1 (MQ=255)
                  taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGtt                                                                           <  1:1614511/100‑1 (MQ=255)
                  taaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGtt                                                                           <  1:1379366/100‑1 (MQ=255)
                    aaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTACAACGGTACACCCCTGCGCCGGGTGCCACTGGCGCAGCGgttttt                                                                            >  2:1098250/1‑95 (MQ=255)
                     aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTAtt                                                                        <  1:347943/100‑1 (MQ=255)
                      atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTc                                                                       >  1:486898/1‑100 (MQ=255)
                       tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTcc                                                                      <  2:1924403/100‑1 (MQ=255)
                       tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTcc                                                                      <  1:1066313/100‑1 (MQ=255)
                       tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTcc                                                                      <  1:1074514/100‑1 (MQ=255)
                        cTGGAATTACAACGACGAAATCCATCCCCCGGAGCTGAAATCCCACTCCACCGGGTCTACCCCGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTcc                                                                      <  2:973614/99‑1 (MQ=255)
                         tGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCAc                                                                    <  1:410575/100‑1 (MQ=255)
                          gggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACt                                                                   >  1:1957944/1‑100 (MQ=255)
                           ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTg                                                                  <  1:52510/100‑1 (MQ=255)
                             aTTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGaa                                                                <  1:944934/100‑1 (MQ=255)
                               ttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAc                                                              <  1:918097/100‑1 (MQ=255)
                               ttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAc                                                              <  1:1594053/100‑1 (MQ=255)
                                tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGCTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAc                                                              >  2:482910/1‑99 (MQ=255)
                                 cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACa                                                             >  2:2517957/1‑99 (MQ=255)
                                 cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAg                                                            <  1:413655/100‑1 (MQ=255)
                                 cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAg                                                            >  1:406824/1‑100 (MQ=255)
                                   aaggcggcATCCAGCCACCGGAGATGAAAACACAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                          >  1:1727563/3‑100 (MQ=255)
                                    cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCat                                                         >  1:1439098/1‑100 (MQ=255)
                                    cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCa                                                          <  2:1412879/99‑1 (MQ=255)
                                        ggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTg                                                     <  1:1344568/100‑1 (MQ=255)
                                          catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgc                                                   >  1:559754/1‑100 (MQ=255)
                                          catccatcCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgc                                                   <  1:2036365/100‑1 (MQ=255)
                                            tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGgcgc                                                 >  2:1659442/1‑100 (MQ=255)
                                              catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGTTGCCCCTGGCGCACCGTCTTGTTATACCACTGAAACAGCAGATTGgcgc                                                 >  2:1325832/1‑98 (MQ=255)
                                               atccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGa                                              <  1:327956/100‑1 (MQ=255)
                                                tccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGTCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGaa                                             <  2:420403/100‑1 (MQ=255)
                                                 ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGaa                                             <  1:734679/99‑1 (MQ=255)
                                                   aCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAg                                            <  1:1614731/98‑1 (MQ=255)
                                                    ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGt                                          <  1:515653/99‑1 (MQ=255)
                                                    ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                         >  1:2063743/1‑100 (MQ=255)
                                                    ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                         >  2:222823/1‑100 (MQ=255)
                                                    ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTg                                         >  1:2463001/1‑100 (MQ=255)
                                                      ggAGATGAAACCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAg                                       <  1:2289200/100‑1 (MQ=255)
                                                       gagaTGAAAACCCAGTCCAACGGTACACCTCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGt                                      <  1:158866/100‑1 (MQ=255)
                                                        agaTGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGtt                                     <  2:2308637/100‑1 (MQ=255)
                                                           tGAAAACCCAGTCTAACGGTACAGCCATGCGCCTGGTGCCCCTGTCGCAGCGTTTTGTTATTCCACTGAAAGAGCATATTGGCGCTGAAGGTGAGTtg                                    >  2:376494/1‑98 (MQ=255)
                                                           tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                  <  1:1256382/100‑1 (MQ=255)
                                                           tGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                                  <  1:183699/100‑1 (MQ=255)
                                                            gAACACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGATATTCCCCTGAAACAGCATATTGGCGCTGAAGGTGAGTTATGc                                 >  2:2548301/1‑100 (MQ=255)
                                                            gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGc                                 <  1:92005/100‑1 (MQ=255)
                                                             aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgt                                   >  1:1905699/1‑97 (MQ=255)
                                                             aaaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCg                                <  2:391837/100‑1 (MQ=255)
                                                              aaaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGt                               >  2:74520/1‑100 (MQ=255)
                                                               aaCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGtt                              >  2:718565/1‑100 (MQ=255)
                                                                aCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTa                             >  1:1781735/1‑100 (MQ=255)
                                                                aCCCAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTa                             >  1:2120682/1‑100 (MQ=255)
                                                                   cAGTCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCg                          <  1:1659828/100‑1 (MQ=255)
                                                                      tCCAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGATTTGTTATTCCACTGAAAAAGCATATTGGCGCTGAAGGTGAGGTGTGCGTTAGCGTCg                       >  1:2515908/1‑100 (MQ=255)
                                                                       ccAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTCTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCg                       >  2:583994/1‑99 (MQ=255)
                                                                        cAACGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGc                     <  2:4981/100‑1 (MQ=255)
                                                                           cGGTACACCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt                  >  1:2146179/1‑100 (MQ=255)
                                                                             acaaaacgcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaa                >  1:2363613/9‑100 (MQ=38)
                                                                               acacCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAg              <  1:1659454/100‑1 (MQ=255)
                                                                                 acCCCTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTa            >  1:1317843/1‑100 (MQ=255)
                                                                                  ccccTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt           <  2:2018640/100‑1 (MQ=255)
                                                                                   cgcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt          >  1:1418002/3‑100 (MQ=255)
                                                                                   cgcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCAGCGATAAAGTAtt          >  2:2521941/3‑100 (MQ=255)
                                                                                   cgcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGATGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt          >  2:360760/3‑100 (MQ=255)
                                                                                   cccTGCGCCAGGTGCCCCTTGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTTAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTa            <  2:1571552/98‑1 (MQ=255)
                                                                                    gcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg         >  1:957412/2‑100 (MQ=255)
                                                                                    gcTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg         >  2:820681/2‑100 (MQ=255)
                                                                                    ccTGCGCCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg         <  2:2096532/100‑1 (MQ=255)
                                                                                     cTGCGCCAGGGGCACCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc        >  1:449572/1‑100 (MQ=255)
                                                                                      tGCGCCAGGTGCCGCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgcg       >  1:1721838/1‑100 (MQ=255)
                                                                                         gcCAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg    <  2:682201/100‑1 (MQ=255)
                                                                                          cctggTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAACCAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGc   <  1:1325841/97‑1 (MQ=255)
                                                                                          ccAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCgg    <  2:1791288/99‑1 (MQ=255)
                                                                                           cAGGTGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGcc  <  1:718572/100‑1 (MQ=255)
                                                                                                |                                                                                              
CTCTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGGCC  >  NC_000913/1706933‑1707123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A