Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I1 R1
|
174 |
80.0 |
3892211 |
96.7% |
3763768 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
NC_000913 |
4,370,611 |
Δ5 bp |
intergenic (‑199/‑73) |
yjeH ← / → groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 4370610 | 3 (0.040) | 62 (0.790) |
52/194 |
0.6 |
95.4% |
intergenic (‑198/‑78) |
yjeH/groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
| ? | NC_000913 |
4370616 = |
3 (0.040) | intergenic (‑204/‑72) |
yjeH/groS |
putative transporter/Cpn10 chaperonin GroES, small subunit of GroESL |
ATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4370510‑4370610
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGC > NC_000913/4370616‑4370714
ATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCT > 1:648095/1‑100
ATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCT > 1:639787/1‑100
GAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGAGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTC < 2:592631/99‑1
AAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCAC > 1:166143/1‑100
ATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCA < 1:501574/100‑1
TGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAG > 1:984523/1‑100
AGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGG > 1:1491295/1‑100
GGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGG < 1:804391/100‑1
GGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGG < 1:1342802/99‑1
TGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAA > 1:691534/1‑100
GAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAA < 2:70926/100‑1
AGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCTTCCACATTTCTCACCAGCCGGGAAACCACG > 1:1783053/1‑100
GGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTA < 2:1004869/100‑1
TTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAA < 1:1750187/99‑1
CACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTTCCCCTTGAAGGGGCGAAGCCACATCCCCATTTCTCACCAGCCGGGAAACCACGTAAac > 1:249752/1‑95
ACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCG > 1:1573358/1‑100
CCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGG > 2:1819642/1‑100
TTTTGTGCTGATCAGAATTTTTTTTTTTTTTTTTTCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTC > 1:1910143/1‑99
TTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAC < 1:379343/100‑1
TTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACC < 2:723612/100‑1
TGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCC > 2:1579710/1‑100
GCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATA < 2:1543965/100‑1
GCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATA < 2:648096/100‑1
TGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAC > 2:1155010/1‑100
GATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACA < 2:1078477/100‑1
ATCAGAATTTTTTTTTTTTTTTTCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACA > 1:1106640/1‑99
ATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAG < 2:984524/100‑1
ATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAG < 2:1407430/100‑1
ATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAG < 2:1696055/100‑1
ATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAG < 1:87172/100‑1
TCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGA < 2:1693438/100‑1
ATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGG < 2:1571265/100‑1
ATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGG < 2:1570696/100‑1
ATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGG < 2:1463167/100‑1
TTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTTACCCATAACAGATACGGACT < 1:1191570/100‑1
TTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACT < 2:1140202/100‑1
TTTTCTTTTTCCCCCTTGAAGGGACGAAGCCTCATCCCCATTTCTCACCAGCCGGGCAACCACGTAAGCTCCGACGTCACACATAACAGATACAGAC > 1:1543757/1‑97
TTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTC > 2:885603/1‑100
TTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTC < 1:1724354/100‑1
TTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCT > 2:512377/1‑100
TTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCT < 2:1522936/100‑1
TCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTC < 1:878706/100‑1
TTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAA > 2:903080/1‑100
CCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGTCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAG > 2:311502/1‑100
CCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAG > 2:314226/1‑100
CCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAG < 2:825271/100‑1
AGGGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAA < 2:639788/100‑1
GGGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATG < 2:926496/100‑1
GGCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAATCCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGA > 2:1369251/1‑100
GCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAA > 2:1244841/1‑100
GCGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCCCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAA < 2:47726/100‑1
CGAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAAT > 1:1744794/1‑100
GAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATA > 2:652134/1‑100
GAAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATA > 1:1595575/1‑100
AAGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATAT < 2:321235/100‑1
AGCCTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATT > 1:458460/1‑100
CTCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGT > 1:1370268/1‑100
TCATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTC < 2:1870595/100‑1
CATCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCC > 1:109996/1‑100
TCCCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCAT < 2:1910156/100‑1
CCCATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTG < 1:1226454/100‑1
CATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCA < 1:1575422/100‑1
CATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCA < 1:436309/100‑1
ATTTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCAT < 1:601048/100‑1
TTCTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATG < 1:1915824/99‑1
TCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCG < 2:458462/100‑1
CACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGCGAGTTATCAATGAATATTCGTCCATTGCATGATCGC > 1:1812024/1‑100
CACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGC > 2:344828/1‑100
ATGAAATGTGAGGTGAATCAGGGTTTTCACCCGATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4370510‑4370610
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTTATCAATGAATATTCGTCCATTGCATGATCGC > NC_000913/4370616‑4370714
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
