Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F133 I0 R1	200	171.4	8351354	94.3%	7875326	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,603,361	A→G	16.7%	intergenic (‑503/‑116)	yjjP ← / → yjjQ	DUF1212 family inner membrane protein/putative transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,603,361	0	A	G	16.7%	477.2 / 81.7	216	intergenic (‑503/‑116)	yjjP/yjjQ	DUF1212 family inner membrane protein/putative transcriptional regulator
Reads supporting (aligned to +/- strand): ref base A (99/81); new base G (19/17); total (118/98)
Fisher's exact test for biased strand distribution p-value = 8.56e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01

Only 100 of 225 total aligned reads displayed.

ATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGACAG  >  NC_000913/4603262‑4603460

 ttttAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGaa                                                                                                    >  1:3093394/1‑100 (MQ=255)

     aaaTGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTg                                                                                                <  2:1866927/100‑1 (MQ=255)

      aaTGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGa                                                                                               <  2:2185600/100‑1 (MQ=255)

       aTGTCTGCAGGCTATTTCACCAGGTTATCATTTGATGCTCATCTTCTGACACATGCAGTGGAGTTGTTGTGAAGCTGGTGTATGCTGATATGAAAGTGa                                                                                               >  2:3962892/1‑99 (MQ=255)

        tGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAAt                                                                                             >  1:3402819/1‑100 (MQ=255)

        ngTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAAt                                                                                             >  2:2113104/2‑100 (MQ=255)

           ctcCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCt                                                                                          >  1:2876709/1‑100 (MQ=255)

           ctcCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCt                                                                                          >  1:2071503/1‑100 (MQ=255)

            tcCAGGCTATTTCACCAGGTTATCCTTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGa                                                                                               >  2:1325687/1‑94 (MQ=255)

            tcCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTa                                                                                         >  2:1665228/1‑100 (MQ=255)

              cAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACGTGCAGTGGAGATGTTGTCCAGCAGGACTGCGCTGATATGAAAGTGAATGCTaa                                                                                        >  2:2834150/1‑99 (MQ=255)

              cAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAg                                                                                       >  2:3624333/1‑100 (MQ=255)

                ggCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGa                                                                                     >  2:2701740/1‑100 (MQ=255)

                atcTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGa                                                                                     <  1:2162826/98‑1 (MQ=255)

                    aTTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGaagat                                                                                 >  2:2162815/1‑96 (MQ=255)

                    aTTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAAt                                                                                 >  2:3081835/1‑100 (MQ=255)

                      ttCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAAttt                                                                               >  2:3146122/1‑100 (MQ=255)

                      ttCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAAttt                                                                               <  2:1837208/100‑1 (MQ=255)

                          ccAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTc                                                                           >  2:1490770/1‑100 (MQ=255)

                           cAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCg                                                                          >  1:3546329/1‑100 (MQ=255)

                            aGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGc                                                                         <  1:3873267/100‑1 (MQ=255)

                            aGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGc                                                                         <  1:3599266/100‑1 (MQ=255)

                            aGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTATGCAGAAGAAGTATGATGATATGAACGTGAATGCTAAGGATAATTTAt                                                                             >  2:2379399/1‑96 (MQ=255)

                             ggTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCt                                                                        <  2:2611810/100‑1 (MQ=255)

                             ggTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCt                                                                        >  2:3827446/1‑100 (MQ=255)

                             ggTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCt                                                                        <  1:2556736/100‑1 (MQ=255)

                              gTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCtt                                                                       <  1:3596781/100‑1 (MQ=255)

                              gTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCtt                                                                       >  2:2754741/1‑100 (MQ=255)

                              gTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCtt                                                                       <  2:1254491/100‑1 (MQ=255)

                                  tCATCTGATGCTAACCTTCCGACACATGCAGAGGAGTTGTTGAGCAGCACGAGTATGCCGATATGAAAGTGAATGCTAAGGCTAATTTATTCGCTTAATc                                                                   <  1:2268851/100‑1 (MQ=255)

                                    aTTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTa                                                                 >  1:581376/1‑100 (MQ=255)

                                    aTTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTa                                                                 >  1:1136447/1‑100 (MQ=255)

                                     tttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAt                                                                <  2:2071492/100‑1 (MQ=255)

                                     tttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAt                                                                <  1:3233744/100‑1 (MQ=255)

                                     tttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAt                                                                <  1:2710332/100‑1 (MQ=255)

                                      ttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCATGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAtt                                                               <  2:1845645/100‑1 (MQ=255)

                                      ttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAtt                                                               <  1:3713986/100‑1 (MQ=255)

                                      ttGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTAtt                                                               <  2:464036/100‑1 (MQ=255)

                                              aaCCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCt                                                       >  1:3169957/1‑100 (MQ=255)

                                               aCCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTg                                                      <  1:1152099/100‑1 (MQ=255)

                                                ccTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTgg                                                     <  1:3922849/100‑1 (MQ=255)

                                                 cTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGa                                                    >  1:738438/1‑100 (MQ=255)

                                                 cTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGa                                                    <  2:1812639/100‑1 (MQ=255)

                                                      gACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACAt                                               >  1:1555864/1‑100 (MQ=255)

                                                       acacATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACAtt                                              <  1:3559017/100‑1 (MQ=255)

                                                       acacATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACAtt                                              >  2:3453297/1‑100 (MQ=255)

                                                        cacaTGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACAttt                                             >  1:863938/1‑100 (MQ=255)

                                                          caTGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTaa                                           >  1:4004787/1‑100 (MQ=255)

                                                          caTGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTaa                                           >  1:1673883/1‑100 (MQ=255)

                                                           aTGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAg                                          <  1:2600684/100‑1 (MQ=255)

                                                           aTGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAg                                          <  1:4030216/100‑1 (MQ=255)

                                                            tGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTTATATGAAAGTGAATTCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAgg                                         <  2:2383543/100‑1 (MQ=255)

                                                            tGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAgg                                         <  1:314875/100‑1 (MQ=255)

                                                              cAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGgaa                                       >  2:694701/1‑100 (MQ=255)

                                                                gTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGgaatg                                     >  1:2883398/1‑100 (MQ=255)

                                                                   gAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGgaatgaat                                  <  1:2580178/100‑1 (MQ=255)

                                                                    aGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAata                                 <  1:2481355/100‑1 (MQ=255)

                                                                     gttgttGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAatat                                >  1:1305546/1‑100 (MQ=255)

                                                                     gttgttGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAatat                                >  2:3120810/1‑100 (MQ=255)

                                                                       gatcttgCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATcc                              <  1:4126850/95‑1 (MQ=255)

                                                                        gttgtGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATTTATTAATTTGCTGGAAACATTTAACGAATGAATATCCt                             <  2:2571476/100‑1 (MQ=255)

                                                                        gttgtGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCt                             >  2:3262260/1‑100 (MQ=255)

                                                                        gttgtGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCt                             >  1:2283629/1‑100 (MQ=255)

                                                                        gttgtGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCt                             >  1:3750109/1‑100 (MQ=255)

                                                                         ttgtGCAGCAGGAGAATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCACTTAATCTATTAATTTACTAGAAACATTTAAGCAATGAATATCCTg                            >  2:3325709/1‑100 (MQ=255)

                                                                          tgtgCAGCAGGAGTATGCTTATATGGAAGTTAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTg                            <  2:1376934/99‑1 (MQ=255)

                                                                           gtgCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGaa                          >  2:1743475/1‑100 (MQ=255)

                                                                           gtgCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGaa                          >  2:4017929/1‑100 (MQ=255)

                                                                            tgCAGCAGGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATccagatc                         >  2:4126816/1‑95 (MQ=255)

                                                                            tgCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAAt                         <  1:305257/100‑1 (MQ=255)

                                                                            tgCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAAt                         >  2:114989/1‑100 (MQ=255)

                                                                            tgCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGATTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAAt                         >  2:2950578/1‑100 (MQ=255)

                                                                             gcagcaGTAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAACCATTTAAGGAATGAATATCCTGAATa                        <  2:3655219/100‑1 (MQ=255)

                                                                             gcagcaGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAAt                         <  2:2310913/99‑1 (MQ=255)

                                                                             gcagcaGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATa                        >  2:2446136/1‑100 (MQ=255)

                                                                             gcagcaGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATa                        >  1:1428481/1‑100 (MQ=255)

                                                                             gcagcaGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATa                        <  1:2445565/100‑1 (MQ=255)

                                                                              cagcagGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATaa                       >  1:706539/1‑100 (MQ=255)

                                                                              cagcagGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATaa                       >  2:3223360/1‑100 (MQ=255)

                                                                               agcagGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATaaa                      <  1:331136/100‑1 (MQ=255)

                                                                                gtatgAGTATGTTGATATTAAAATGAATGTTAAGGTAAATTTATAAGCTTAATCTATTAATTTTCTGGAAATATTTAAGGAATGAATATCTTGAATAAAc                     <  2:1951350/96‑1 (MQ=255)

                                                                                 cagGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAAcc                    <  1:199946/100‑1 (MQ=255)

                                                                                  agGGGTATGATGATATGAAAGTGAATGCTAAGGATAATTTATTAGCTTAATTTATTAATTTGCTGGAAACATTTAAGGAATGAATATCGTGAATaaa                      <  2:347333/97‑1 (MQ=255)

                                                                                  agGAGTATGCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACca                   <  1:2977088/100‑1 (MQ=255)

                                                                                   ggAGTCTGCTGATATGAAAGTGAACGCTAAGGATAATTTATTCGCTTACTATATTAATTTGCTGGAAACATTTAAGGAATGAATATCATGAATAAAc                     >  2:3295833/1‑97 (MQ=255)

                                                                                   ggAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACcat                  >  1:1620288/1‑100 (MQ=255)

                                                                                   ggAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACcat                  >  1:1264136/1‑100 (MQ=255)

                                                                                   ggAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACcat                  <  1:440564/100‑1 (MQ=255)

                                                                                     aGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACcatca                <  1:3422800/100‑1 (MQ=255)

                                                                                          gCTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAtt           >  2:511474/1‑100 (MQ=255)

                                                                                          gCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAtt           >  2:1188324/1‑100 (MQ=255)

                                                                                           cTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAttt          >  1:1735974/1‑100 (MQ=255)

                                                                                           cTGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAttt          >  2:4056545/1‑100 (MQ=255)

                                                                                           cTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAttt          >  2:1087558/1‑100 (MQ=255)

                                                                                           cTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATCTGCTGGTCACATATAAGGAATGAATATCCCGAAGAAACCATCCTAAt            >  2:3572451/1‑98 (MQ=255)

                                                                                            tGATATGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGATGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAAtttt         >  2:1959374/1‑100 (MQ=255)

                                                                                              atatGGAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTa       <  1:990440/100‑1 (MQ=255)

                                                                                                atGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGa     >  1:34124/1‑100 (MQ=255)

                                                                                                 tGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGAc    >  2:2533240/1‑100 (MQ=255)

                                                                                                 tGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGAc    <  2:590335/100‑1 (MQ=255)

ATTTTAAATGTCTCCAGGCTATTTCACCAGGTTATCATTTGATGCTAACCTTCTGACACATGCAGTGGAGTTGTTGTGCAGCAGGAGTATGCTGATATGAAAGTGAATGCTAAGGATAATTTATTCGCTTAATCTATTAATTTGCTGGAAACATTTAAGGAATGAATATCCTGAATAAACCATCATAATTTTTAGACAG  >  NC_000913/4603262‑4603460

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A