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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F50 I2 R1	209	44.2	1360995	98.7%	1343302	150.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,755,661	Δ2,703 bp		pykF–[ldtE]	pykF, lpp, [ldtE]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1755661	1758363	2703	49 [0]	[1] 50	pykF–[ldtE]	pykF, lpp, [ldtE]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1755660	0 (0.000)	49 (1.140)	45/296	0.1	99.0%	intergenic (‑519/‑38)	ydhZ/pykF	uncharacterized protein/pyruvate kinase I
*	?	NC_000913	1758364 =	1 (0.020)	49 (1.140)	45/296	0.1	99.0%	coding (362/1005 nt)	ldtE	murein L,D‑transpeptidase

GATK/CNVnator alignment

N/A