Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F28 I1 R1 49 74.1 3405600 94.6% 3221697 141.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 5,986,841 T→A intergenic (+121/‑78) PP_5245 → / → kefB‑III AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,986,8410TA100.0% 245.2 / NA 72intergenic (+121/‑78)PP_5245/kefB‑IIIAraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (39/33);  total (39/33)

GCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGTCTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCGTCCC  >  NC_002947/5986701‑5986986
                                                                                                                                             |                                                                                                                                                 
gCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGc                                                                                                                                            >  5:174604/1‑148 (MQ=255)
       aCAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTAc                                                                                                                                    >  1:219279/1‑149 (MQ=255)
        cAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTAcc                                                                                                                                   <  2:58855/149‑1 (MQ=255)
        cAGTCCGATTAGCGCTGCCTTCTTCGCCGGCCCGCCCGCTCCCACAGAGATAGCACACGCCTAGAGCCCACGTAACCCCCGGCACCGATAGTCACACT‑GGACAGCACAAATTTTCATCCCGTCAGATGCTAGACAGCCGCCacacagcc                                                                                                                                   >  6:56848/1‑145 (MQ=255)
        cAGTCCGATTAGCGCAGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTAAGATGATTGACTGACGCCACACTAcc                                                                                                                                   >  6:256886/1‑149 (MQ=255)
         aGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTAccc                                                                                                                                  <  2:386332/149‑1 (MQ=255)
           tCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGTACAATTTTTATTCCCGTCAGATGATTGACTTACGCCACACTAcccc                                                                                                                                 >  6:422508/1‑148 (MQ=255)
           tCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCt                                                                                                                                >  3:306820/1‑149 (MQ=255)
              gATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCt                                                                                                                                >  2:23331/1‑146 (MQ=255)
                         ccTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGt                                                                                                                   >  5:55001/1‑148 (MQ=255)
                         ccTTCTTCGCGGGCCCGCCCGCTCCCACAGAGAAACCACAGGCCTTGAGCCCAGGAAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGt                                                                                                                   <  5:422508/148‑1 (MQ=255)
                           ttcttcGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCa                                                                                                                 >  3:280125/1‑148 (MQ=255)
                           ttcttcGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCa                                                                                                                 >  4:52425/1‑148 (MQ=255)
                             cttcGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCaaa                                                                                                               <  6:430013/148‑1 (MQ=255)
                                cgcgGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACTCCTCAGAATTGTCCGTCAAACTg                                                                                                            <  2:62791/148‑1 (MQ=255)
                                 gggggcgggcGCGCTCCCACAGAGATAGCAGAGGCCTTGAGCCCTGGTAAGCGCCTGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGtt                                                                                                          <  4:96639/147‑1 (MQ=255)
                                 gcgGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGtt                                                                                                          <  2:219279/149‑1 (MQ=255)
                                 gcgGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGtt                                                                                                          >  7:43820/1‑149 (MQ=255)
                                 gcgGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGtt                                                                                                          <  6:174604/149‑1 (MQ=255)
                                  cgGGCGCGCACGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGTCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTc                                                                                                         <  5:257010/149‑1 (MQ=255)
                                    ggCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTc                                                                                                                      <  5:360320/134‑1 (MQ=255)
                                    ggCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTc                                                                                                                      >  6:360320/1‑134 (MQ=255)
                                         gcCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCt                                                                                                  <  3:126336/149‑1 (MQ=255)
                                                 ccACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGAGAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCCCAGTACCACTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           >  2:285063/1‑148 (MQ=255)
                                                  cacaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           >  4:275260/1‑147 (MQ=255)
                                                  cacaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           >  1:352940/1‑147 (MQ=255)
                                                  cacaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           >  2:98035/1‑147 (MQ=255)
                                                  cacaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           <  2:352940/147‑1 (MQ=255)
                                                   acaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTCGAACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTTTCCGTCAAACTGTTCGAACGCTGCCCCgg                                                                                           >  1:330633/1‑147 (MQ=255)
                                                   acaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAg                                                                                        >  4:270284/1‑149 (MQ=255)
                                                    caGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGc                                                                                       >  3:77727/1‑149 (MQ=255)
                                                         aTAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATg                                                                                  <  5:399824/149‑1 (MQ=255)
                                                          tAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATg                                                                                  <  3:270284/148‑1 (MQ=255)
                                                             cacaGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAg                                                                               >  3:318098/1‑148 (MQ=255)
                                                             cacaGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGCAg                                                                               >  8:306331/1‑148 (MQ=255)
                                                              acaGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTa                                                                             >  2:220244/1‑149 (MQ=255)
                                                                  gCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAg                                                                         <  4:306820/149‑1 (MQ=255)
                                                                       gAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCaa                                                                     <  2:259456/148‑1 (MQ=255)
                                                                           ccAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGt                                                                                                           <  8:80632/106‑1 (MQ=255)
                                                                            cAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCca                                                                >  1:251820/1‑148 (MQ=255)
                                                                             aGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCcaca                                                              >  1:305810/1‑149 (MQ=255)
                                                                               gTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACg                                                            <  4:280125/149‑1 (MQ=255)
                                                                                  aGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGaa                                                          <  3:275260/148‑1 (MQ=255)
                                                                                  aGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAg                                                         <  5:256886/149‑1 (MQ=255)
                                                                                       cGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGc                                                    >  5:116946/1‑149 (MQ=255)
                                                                                         gCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATg                                                                                  >  1:105499/1‑117 (MQ=255)
                                                                                         gCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATg                                                                                  <  2:105499/117‑1 (MQ=255)
                                                                                         gCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGaa                                                          <  4:141480/141‑1 (MQ=255)
                                                                                         gCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGaa                                                          >  3:141480/1‑141 (MQ=255)
                                                                                           aCCGATTGTCACTCT‑GGACAGGACAATTTTTCTTACCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTc                                                >  4:398386/1‑149 (MQ=255)
                                                                                            ccGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCt                                               >  4:119360/1‑149 (MQ=255)
                                                                                                         t‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCgg                                    <  3:52425/147‑1 (MQ=255)
                                                                                                            gacaggacaATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACACTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTg                                  <  4:335750/147‑1 (MQ=255)
                                                                                                            gacaggacaATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACACTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTg                                  >  3:335750/1‑147 (MQ=255)
                                                                                                             acaggacaATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATc                               >  8:123230/1‑149 (MQ=255)
                                                                                                                  acaATTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCt                          <  6:116946/149‑1 (MQ=255)
                                                                                                                    aaTTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGc                                                                                          <  1:125342/83‑1 (MQ=255)
                                                                                                                    aaTTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGc                                                                                          >  2:125342/1‑83 (MQ=255)
                                                                                                                    aaTTTTTCTTCCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGACAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGc                        >  7:351560/1‑149 (MQ=255)
                                                                                                                            ttcCCGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAACCCGCGGTGATCTTCCTGCTTgccgcc                >  4:53813/1‑149 (MQ=255)
                                                                                                                              cccGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGCCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTgccgcc                <  2:330633/147‑1 (MQ=255)
                                                                                                                               ccGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTc             <  6:55001/149‑1 (MQ=255)
                                                                                                                                cGTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTcc            >  1:119962/1‑149 (MQ=255)
                                                                                                                                 gTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCt           >  7:399319/1‑149 (MQ=255)
                                                                                                                                 gTCAGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCt           >  6:242020/1‑149 (MQ=255)
                                                                                                                                    aGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCg         <  8:253357/148‑1 (MQ=255)
                                                                                                                                     gatgatTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGcc       >  2:265808/1‑149 (MQ=255)
                                                                                                                                     gatgatTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGcc       <  8:43820/149‑1 (MQ=255)
                                                                                                                                       tgatTGACTGACGCCAGACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAATCCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCGt     <  5:56848/149‑1 (MQ=255)
                                                                                                                                       tgatTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCg      <  3:398386/148‑1 (MQ=255)
                                                                                                                                          ttGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCGTccc  <  5:153480/149‑1 (MQ=255)
                                                                                                                                          ttGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCGTccc  >  2:315959/1‑149 (MQ=255)
                                                                                                                                             |                                                                                                                                                 
GCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCT‑GGACAGGACAATTTTTCTTCCCGTCAGATGATTGTCTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGTCCTCGCCGTCCC  >  NC_002947/5986701‑5986986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A