Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F114 I0 R1
|
1965 |
55.6 |
2796252 |
92.6% |
2589329 |
137.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_002947 |
5,986,841 |
T→A |
100% |
intergenic (+121/‑78) |
PP_5245 → / → kefB‑III |
AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_002947 | 5,986,841 | 0 | T | A | 100.0%
| 190.9
/ NA
| 58 | intergenic (+121/‑78) | PP_5245/kefB‑III | AraC family transcriptional regulator/glutathione‑regulated potassium/H+ antiporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (29/29); total (29/29) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGTCTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGT > NC_002947/5986701‑5986974
|
gCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGc > 2:278626/1‑148 (MQ=255)
aCAGTCCGTTTAGCTCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTAc < 1:291309/149‑1 (MQ=255)
aGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTatgc > 3:153669/1‑146 (MQ=255)
gcgcTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTg > 6:105116/1‑149 (MQ=255)
cTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTcc < 1:104779/149‑1 (MQ=255)
gCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCg > 4:26539/1‑148 (MQ=255)
ccTTCTTCGCGGGCGCGCCCGGGCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGAACGGTCAATTTTTCTTCCCGTAA‑‑GATGATTGACTTACTCAACACTTCGCGTCAGAAtattgcgt > 8:298392/1‑141 (MQ=255)
ttcttcGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCa > 4:20616/1‑148 (MQ=255)
gcgGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑t < 3:26539/148‑1 (MQ=255)
cccGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTg < 3:20616/149‑1 (MQ=255)
ccGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCa < 1:80044/119‑1 (MQ=255)
ccGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCa > 2:80044/1‑119 (MQ=255)
ccGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGc > 3:90759/1‑149 (MQ=255)
tCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCg > 3:124898/1‑149 (MQ=255)
tCCCACAGAGATAGCACAGGCCTTGAGCCAAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGt < 7:196105/122‑1 (MQ=255)
tCCCACAGAGATAGCACAGGCCTTGAGCCAAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGt > 8:196105/1‑122 (MQ=255)
ccACGGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCtaa > 2:276967/1‑111 (MQ=255)
ccACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCt > 6:167443/1‑111 (MQ=255)
ccACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCt < 5:167443/111‑1 (MQ=255)
ccACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGc < 5:105116/149‑1 (MQ=255)
cacaGATATATCACAGGCCTTGATCCCAGGTAAGCGCCGGGACCGATTGTCACTCTGGACACGTCAATTTTTCTTCCCGTCATTGATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCgg < 1:278626/149‑1 (MQ=255)
acaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCgg > 2:44166/1‑146 (MQ=255)
acaGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCa < 1:44166/148‑1 (MQ=255)
agagATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGc > 8:185009/1‑148 (MQ=255)
agagATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCt > 5:316401/1‑149 (MQ=255)
gaTAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCAt > 5:320974/1‑149 (MQ=255)
aTAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg < 6:320974/149‑1 (MQ=255)
aTAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg < 4:116794/149‑1 (MQ=255)
aTAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg < 4:90759/149‑1 (MQ=255)
cacaGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCaaa < 4:235164/116‑1 (MQ=255)
cacaGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCaaa > 3:235164/1‑116 (MQ=255)
ggCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACCATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGa < 7:185009/149‑1 (MQ=255)
ccTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg < 5:117304/139‑1 (MQ=255)
ccTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg > 6:117304/1‑139 (MQ=255)
ccTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGc > 4:329584/1‑149 (MQ=255)
cAGGTAAGCGCCGTCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCcac < 7:298392/149‑1 (MQ=255)
ggTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg > 7:25405/1‑128 (MQ=255)
ggTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATg < 8:25405/128‑1 (MQ=255)
gTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGc < 2:129480/137‑1 (MQ=255)
gTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCagatcggg > 1:129480/1‑139 (MQ=255)
aGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAg < 4:124898/149‑1 (MQ=255)
cGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGc < 6:316401/149‑1 (MQ=255)
ggCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAg > 5:276543/1‑143 (MQ=255)
ggCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAg < 6:276543/143‑1 (MQ=255)
gCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCt > 4:24893/1‑149 (MQ=255)
cGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTg > 1:217314/1‑149 (MQ=255)
aCTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCt > 4:339565/1‑140 (MQ=255)
aCTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCt < 3:339565/140‑1 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGTTTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTC‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTTCGAGCCAATGCCACACGATGGCAGCCTTCTg < 8:221808/130‑1 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGc > 6:339500/1‑110 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGc < 5:339500/110‑1 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCt < 6:85475/129‑1 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCt > 5:85475/1‑129 (MQ=255)
gacaATTTTTCTTCCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTcc < 3:329584/149‑1 (MQ=255)
ttcttcCCGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTgc < 3:24893/148‑1 (MQ=255)
ccGTCA‑‑GATGATTGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTGCTTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGt > 1:266123/1‑149 (MQ=255)
ttGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTa < 5:164807/74‑1 (MQ=255)
ttGACTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTa > 6:164807/1‑74 (MQ=255)
|
GCGGTGAACAGTCCGATTAGCGCTGCCTTCTTCGCGGGCGCGCCCGCTCCCACAGAGATAGCACAGGCCTTGAGCCCAGGTAAGCGCCGGCACCGATTGTCACTCTGGACAGGACAATTTTTCTTCCCGTCA‑‑GATGATTGTCTGACGCCACACTACCCCTCAGAATTGTCCGTCAAACTG‑TTCGAACGCTGCCCCGGCAGCTCATGGAGTACGAGCCAATGCCACACGAAGGCAGCCTTCTGCAAACCGCGGTGATCTTCCTGCTTGCCGCCGT > NC_002947/5986701‑5986974
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
