Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 559,654 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583559,6540GC99.0% 464.9 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/2);  new base C (103/97);  total (106/99)
Fisher's exact test for biased strand distribution p-value = 2.39e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6550CG98.5% 468.4 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/2);  new base G (104/97);  total (106/99)
Fisher's exact test for biased strand distribution p-value = 6.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6560TA96.6% 465.6 / NA 205intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (106/92);  minor base C (0/7);  total (106/99)
Fisher's exact test for biased strand distribution p-value = 5.47e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 205 total aligned reads displayed.

GCTTTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGCTCTCCCAGG‑CATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559374‑559931
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
   ttGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑c                                                                                                                                                                                                                                                                            <  2:143444/289‑1 (MQ=255)
    tGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑c                                                                                                                                                                                                                                                                            >  1:1550612/1‑288 (MQ=255)
    tGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑Ca                                                                                                                                                                                                                                                                           >  1:1583494/1‑289 (MQ=255)
        aaaCCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATggg                                                                                                                                                                                                                                                                       <  1:1568372/289‑1 (MQ=255)
          aCCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCACAGG‑CATgg                                                                                                                                                                                                                                                                        >  1:124483/1‑286 (MQ=255)
                            aGCGGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAACCCCAATCACTACCGCCTGGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGGAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTa                                                                                                                                                                                                                                                   <  2:1020671/289‑1 (MQ=255)
                                ggATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCACGCTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTTAGGAACCGAGCAATTTAccc                                                                                                                                                                                                                                                >  2:1593766/1‑288 (MQ=255)
                                      aCGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  1:1214810/289‑1 (MQ=255)
                                      aCGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTgcg                                                                                                                                                                                                                                         <  1:1482329/289‑1 (MQ=255)
                                         cATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                      <  1:205644/289‑1 (MQ=255)
                                           tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccgc                                                                                                                                                                                                                                     >  2:2067064/1‑288 (MQ=255)
                                           tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCgccgcc                                                                                                                                                                                                                                    <  2:1754372/289‑1 (MQ=255)
                                             aCCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  <  1:436578/289‑1 (MQ=255)
                                             aCCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGA‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                  <  1:135454/289‑1 (MQ=255)
                                                    gCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑c                                                                                                                                                                                                                                                                            >  1:1130292/1‑240 (MQ=255)
                                                      aTCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc                                                                                                                                                                                                                           <  2:255470/287‑1 (MQ=255)
                                                      aTCGGGCCCCACAAATTACCAACCCCTCCCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATccacc                                                                                                                                                                                                                           <  2:2132477/287‑1 (MQ=255)
                                                          tGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGCTCACCAGCCCGTCGATCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCCTGTTGCCAGCCAGGCGAACTTTACGTTCAACCAGCGTCATCACCCGCATGATAAAAGCGTTAATCAACACATAAGCCAGCGTAATGGCAGCAAACCACTCCCAAG‑CAGGGGCTGACTAAAGCAGCAATTTACCCCCCCGCGCCGCCCTATACCCCAGAcac                                                                                                                                                                                                                     >  2:1325885/1‑287 (MQ=255)
                                                                 caAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCACATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        <  1:1853820/247‑1 (MQ=255)
                                                                 caAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCACATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCa                                                                                                                                                                                                                                                        >  2:1853820/1‑247 (MQ=255)
                                                                           aTCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGc                                                                                                                                                                                                    >  1:2089381/1‑289 (MQ=255)
                                                                             cACTACCGCCGTGAGGGTGATTTTCAGGGTGATCACCAGCCCGGCGAGCAGAAATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCgg                                                                                                                                                                                                  <  1:372455/289‑1 (MQ=255)
                                                                                        tGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc                                                                                                                                                                                       >  2:1720443/1‑289 (MQ=255)
                                                                                        tGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAATCGAGGCGATGGCGGAGTTTTTCAc                                                                                                                                                                                        >  1:1115601/1‑288 (MQ=255)
                                                                                         gACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATg                                                                                                                                                                                                                                                                         <  1:272264/206‑1 (MQ=255)
                                                                                         gACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATg                                                                                                                                                                                                                                                                         >  2:272264/1‑206 (MQ=255)
                                                                                             gTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGt                                                                                                                                                                                   >  1:1800507/1‑288 (MQ=255)
                                                                                                 ttttacgggTGCTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGCAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:848591/282‑1 (MQ=255)
                                                                                                           gATCACAAGCCCGTCGAGAAGATTTGGCAGGGAAGGGAAAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtctctgag                                                                                                                                                                     <  1:1310966/288‑5 (MQ=255)
                                                                                                                     ccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                             <  1:728571/286‑1 (MQ=255)
                                                                                                                      cGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCggg                                                                                                                                                         >  1:926293/1‑289 (MQ=255)
                                                                                                                       gTCGAACAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTAAATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa                                                                                                                                                        <  1:2181225/289‑1 (MQ=255)
                                                                                                                        tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1014512/265‑1 (MQ=255)
                                                                                                                        tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                               <  1:1767023/265‑1 (MQ=255)
                                                                                                                                 tatGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg                                                                                                                                              <  1:211036/289‑1 (MQ=255)
                                                                                                                                   tGGCAGTGAAGGGACAATGGAACTCCAGCAAACCTCGTACATTATTGGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGAAATGGCGGTAAACGCCTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            <  2:1474399/289‑1 (MQ=255)
                                                                                                                                     gCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCa                                                                                                                                                                                      <  1:811269/245‑1 (MQ=255)
                                                                                                                                     gCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCa                                                                                                                                                                                      >  2:811269/1‑245 (MQ=255)
                                                                                                                                        gggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            >  1:978106/1‑284 (MQ=255)
                                                                                                                                        gggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                            <  2:978106/284‑1 (MQ=255)
                                                                                                                                        gggaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACACCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCCGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGGTTTTCACCAGGTCCATCATCTCTAAGGTCATCGGCGGGACCATAACGCGGTAAGc                                                                                                                                        >  2:1276194/1‑288 (MQ=255)
                                                                                                                                          gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGGGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTACTGGCGGTAAAAGACCTCCAGG‑CATGGGCTGCGTAATCGAACAATTTACCCGCCTGCGCCCCCCTACCCACCAGACCGATCGTCGAGGCGCAGGCGGGGGTTGTTACCACGTTCATCATCTCTGAGGTCATCGGCGGGACCGTGACGGGATAAGCCtt                                                                                                                                     >  2:697640/1‑289 (MQ=255)
                                                                                                                                          gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATCGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt                                                                                                                                     >  1:650602/1‑289 (MQ=255)
                                                                                                                                          gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATACACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGCTCATCATCTCTGAGGTCATCGGCGTGACGCTAACGCGATaatactt                                                                                                                                     >  2:1566536/1‑284 (MQ=255)
                                                                                                                                          gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCA‑‑ACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                    <  1:548056/288‑1 (MQ=255)
                                                                                                                                          gaagcgaCAATGAAAATACAGACAACCTCGTACAGTATTTAC‑CCCCCATGGTGCCAGGCAGGCGAACTTTACGTTAAACAGGCGTCATCACCAGAATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCGCAGG‑CATGGGCTGAGTAAGCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCa                                                                                                                                       <  2:2254610/287‑1 (MQ=255)
                                                                                                                                           aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATTACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGATGCGATGGCGGAGTGTTTCACCAGGTTCATCATCTCTGCGGTCATCCGCGGGACGAAAACCGCATAAGCCttc                                                                                                                                    >  1:1693810/1‑288 (MQ=255)
                                                                                                                                             gggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCCGGTTCATCATCCCTGCGGTCATCGGCCGGGCGGTAACGGCATAAGGATTAgg                                                                                                                                  >  2:613233/1‑289 (MQ=255)
                                                                                                                                               gccAATGGAACTCCAGTCAAACTCGTCAATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgc                                                                                                                                 <  2:755682/286‑1 (MQ=255)
                                                                                                                                                cgaaTGGAACGCCAGTCAACCACTTGCATT‑TTTGCACCCCCAGGTTGCCAGGAAGGCGAACTTTCAGTAAAACCAGCGTCGTCGCCAGCATAATAAAAGCGTTAAACAACCCATACGCCAGGGAAAGGGCGGTAAACGACTCCCAGG‑CGTGGGGTGAGTAATCGGGCAATTTCCCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                               <  2:124483/287‑1 (MQ=255)
                                                                                                                                                aCAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgca                                                                                                                                >  1:165030/1‑288 (MQ=255)
                                                                                                                                                  aaTGGAGCCACAGACAAACCCGTACAATTATTCC‑CCCCCAGGTTGCCAGGCAGGCGAATTTTACGTTCAACCACCGTCATAACCAGAATGATAAAGTCTTTAAGCAACACATACGCAAGCGTAATGGCGGTAAACGACGCCCGGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcagca                                                                                                                             <  2:2167907/289‑1 (MQ=255)
                                                                                                                                                   aTGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGcagcag                                                                                                                            <  1:1074884/289‑1 (MQ=255)
                                                                                                                                                        aCTCCGGTCAAACTCGTACATTATTTGC‑CCACCATGTTGCCAGCCAGGCCAACTTTACTTTCAACCACCGGCATCACCAGCATGATAAAAGCGTTAATCACCACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGt                                                                                                                       <  2:2106634/289‑1 (MQ=255)
                                                                                                                                                         cTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTATGTa                                                                                                                      >  1:1459646/1‑289 (MQ=255)
                                                                                                                                                            cAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGCTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                             <  1:338648/247‑1 (MQ=255)
                                                                                                                                                            cAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGCTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                             >  2:338648/1‑247 (MQ=255)
                                                                                                                                                                cAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTATTCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                 <  1:873602/287‑1 (MQ=255)
                                                                                                                                                                cAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATAT‑CACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                 <  1:1291982/286‑1 (MQ=255)
                                                                                                                                                                 aaaCTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTAACGATaa                                                                                                               >  1:1045016/1‑288 (MQ=255)
                                                                                                                                                                   aCTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                 >  1:1811607/1‑284 (MQ=255)
                                                                                                                                                                   aCTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                 <  2:1811607/284‑1 (MQ=255)
                                                                                                                                                                      cGTACATTATTTGC‑CCCCCGTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc                                                                                                                                                            <  1:789842/238‑1 (MQ=255)
                                                                                                                                                                      cGTACATTATTTGC‑CCCCCGTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggc                                                                                                                                                            >  2:789842/1‑238 (MQ=255)
                                                                                                                                                                      cGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGAcc                                                                                                                                                                                                                      >  2:1759012/1‑180 (MQ=255)
                                                                                                                                                                        tACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcggcgg                                                                                                                                                          <  2:2190517/238‑1 (MQ=255)
                                                                                                                                                                        tACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCgg                                                                                                       >  1:1925804/1‑289 (MQ=255)
                                                                                                                                                                          catattttGC‑CCCCCAGGTTGCAAGAGAGGGGAACTTTAGCGTAAAACGGCTTCAACACAAGCATGAAAAAAGCGTTAATCAAAAAATACGCCAGCGTAAGGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGAAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGt                                                                                                      <  2:1800019/283‑1 (MQ=255)
                                                                                                                                                                             tattTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGt                                                                                                                       <  1:1369666/268‑1 (MQ=255)
                                                                                                                                                                                   c‑cccccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTAt                                                                                                                     >  1:613032/1‑264 (MQ=255)
                                                                                                                                                                                        ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                    >  1:2149119/1‑245 (MQ=255)
                                                                                                                                                                                           tGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCg                                                                                      >  1:20822/1‑288 (MQ=255)
                                                                                                                                                                                               gCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTa                                                                                                                                    <  1:83854/238‑1 (MQ=255)
                                                                                                                                                                                                  aggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCg                                                                                                                                                                                                                                                            <  1:991556/115‑1 (MQ=255)
                                                                                                                                                                                                   ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATACCGCGATAAGCATTAGGCAGCAGTACGTATCGATAACACCGCGGTAGCGTCAGGCCCATCCCCcgcggc                                                                              >  2:1954708/1‑286 (MQ=255)
                                                                                                                                                                                                        gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCAttt                                                                        >  1:405763/1‑289 (MQ=255)
                                                                                                                                                                                                                        aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCa                                                        >  1:241072/1‑289 (MQ=255)
                                                                                                                                                                                                                                    ccaaacaagaaaaaaGCGTAACTCAACGCAAACCCCAGCGGAAAGGAGGTAAACGACCCCAGGG‑CAGGGGCTGAGAAACCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                            <  2:400811/278‑1 (MQ=255)
                                                                                                                                                                                                                                             aTAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGt                                    >  1:588504/1‑288 (MQ=255)
                                                                                                                                                                                                                                             aTAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCCTCCGGCAGCACCGGAATCGCGGCCCGt                                    >  1:2201835/1‑288 (MQ=255)
                                                                                                                                                                                                                                              tAAAAGCGTTAATCAACACAAACGCAAGCGTAATGGCGGTAAACGAACCCCAGG‑CATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTAc                                  <  2:820406/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 aaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg                                                                                                                                              <  1:489339/178‑1 (MQ=255)
                                                                                                                                                                                                                                                 aaGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgcg                                                                                                                                              >  2:489339/1‑178 (MQ=255)
                                                                                                                                                                                                                                                 aaGCGTAAATCAACACATACCCCAGCGTAATGGCGGTAAACGACTCCCGGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTg                               <  1:1973042/289‑1 (MQ=255)
                                                                                                                                                                                                                                                   gCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGt                              >  1:2034304/1‑288 (MQ=255)
                                                                                                                                                                                                                                                      ttAATCAACACATACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGGACCTGTTCg                           >  1:175484/1‑288 (MQ=255)
                                                                                                                                                                                                                                                              cacaTACGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGt                                                                                                                       >  2:846364/1‑188 (MQ=255)
                                                                                                                                                                                                                                                               ccaTACGCAGGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCGTAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACggg                 <  1:1566536/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                   aCGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGGACGTAACGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGAGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGggcggc             >  2:1050879/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                    cGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGgcggcg            >  1:1496162/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                    cGCCAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGgcggcg            >  1:1749530/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                      ccAGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                             >  2:876326/1‑142 (MQ=255)
                                                                                                                                                                                                                                                                        aGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCCGCGACTGAATCGCCGCCCGTCCCTGTTCGCAAACACGGGCCGCGGTaa        >  2:928949/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        aGCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaa        >  1:1515875/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                         gCGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGGACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCCTTTTTTTGGCCCCGCGGCACCCACTGAATCGCGGCGCGTACCTGTTCCCAAACCCGggcgggcggaaa       >  2:2059308/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                          tgatagggCGGAAAAGCACTCGCAGG‑AATGGGCTGAGTAATAGAGCAATTTACCCGCCTGCGCGGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGGGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  2:1617334/282‑1 (MQ=255)
                                                                                                                                                                                                                                                                          cGTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCACCGACTGAATCGCGGCGCGCACCTGTTTGCAAACACACGCGGCGGTCAAc      >  2:1975290/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                          cGTAATGGCGGT‑CAGCACACCCCGGCCATGGGCTAAGTGATCAGGCAATTTCCCCGCCGGCCCCGCCATAGCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  2:1925804/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                           gTAATGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGcagcag                                                                                                                            <  2:564201/170‑1 (MQ=255)
                                                                                                                                                                                                                                                                               tGGCGGTAAACGACTCCCAGG‑CATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTATGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGCTACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGcc  >  1:159499/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                    
GCTTTGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCCGTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGC‑CCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATACGCCAGCGTAATGGCGGTAAAGCTCTCCCAGG‑CATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGGCATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559374‑559931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A