Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F210 I1 R1 4930 262.8 3829204 96.6% 3699011 272.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 559,654 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583559,6540GC98.8% 380.9 / NA 169intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base C (94/72);  total (96/73)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583559,6550CG98.2% 377.6 / NA 169intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (3/0);  new base G (93/73);  total (96/73)
Fisher's exact test for biased strand distribution p-value = 2.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583559,6560TA98.2% 389.7 / NA 169intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (95/71);  minor base C (1/2);  total (96/73)
Fisher's exact test for biased strand distribution p-value = 5.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 169 total aligned reads displayed.

TGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAAGCTCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559378‑559931
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                    
 ggCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCAt                                                                                                                                                                                                                                                                           >  2:971550/1‑289 (MQ=255)
  gCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGACGAGCAGATATGGCAGGGAAGGGACAATGGAACGCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGGCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCCCCAGCATGACAAAAGCGTTAATCAACCCATA‑CGCCAGCGAAACGGCCGTAAACGAATCCCAGGCATg                                                                                                                                                                                                                                                                          >  2:778289/1‑289 (MQ=255)
               cgGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATTGCGGTAAACGACTCCCAGGCCAGGGctgagtaaacg                                                                                                                                                                                                                                                             >  2:425918/1‑279 (MQ=255)
               cgGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCg                                                                                                                                                                                                                                                             <  1:1378755/289‑1 (MQ=255)
                  gcgcAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGCCAGGCGAACTTTCCGTTCAACCAGCGTCACCACCAGCCTGAAAAAAGCGTTAATCAACACAAA‑CGCCACCGTAATTGCGGTAAAGCACTCCCAGCCATGGGCTGAGTAGTCGAga                                                                                                                                                                                                                                                          >  2:1565956/1‑288 (MQ=255)
                     cAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCACCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGGGGTAAACGAATCCCAGGCTAGGGCTGAGTCATGGAGCAAt                                                                                                                                                                                                                                                       >  2:661057/1‑289 (MQ=255)
                        aGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTa                                                                                                                                                                                                                                                    <  1:327010/289‑1 (MQ=255)
                                     caccACCGCCAGCTCCTTCCCCCACAAAAT‑CCACATACCTCCGCCATTGACGATGATTTTCAGAGTGATCCCCAGCCGTTCGAGCAGATCTGGCAGCGAAGAGACAACGGAACTCCAGTCAAACTCGTACATTAGTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCCACACATC‑CGCCAGCGTAATGGCGGTAATCGACTCCCAGGCATGGGCTGAGTATTCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                       <  2:1308406/286‑1 (MQ=255)
                                       tCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGGCAAACTCGTACATTATTTGCCCCCCATGTTTCCACGCAGGCGAACTTTACGTTCAACCAGCGCCATCACCAGCATGATAAAAGCGTTAATCAACACCTA‑CGCCAGCGTAATTGCGTGAACCGACTCCCAAGACTGGGCGTAGTAATCGAGCAACTTTACCGCCTGccccgc                                                                                                                                                                                                                                      >  2:1701402/1‑288 (MQ=255)
                                         aCCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCAAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCat                                                                                                                                                                                                                                   <  1:265133/289‑1 (MQ=255)
                                          ccGCCAGCATCGTGCCCAACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCata                                                                                                                                                                                                                                  <  1:1388086/289‑1 (MQ=255)
                                              cAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                       <  1:263350/280‑1 (MQ=255)
                                              cAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGcgccg                                                                                                                                                                                                                                       >  2:263350/1‑280 (MQ=255)
                                                    cGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGa                                                                                                                                                                                                                         >  1:1194302/1‑288 (MQ=255)
                                                     gTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGAc                                                                                                                                                                                                                        >  2:263601/1‑288 (MQ=255)
                                                       gCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGa                                                                                                                                                                                                                     <  1:277770/289‑1 (MQ=255)
                                                           cacaAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAg                                                                                                                                                                                                                  >  1:1773945/1‑288 (MQ=255)
                                                                     cAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGa                                                                                                                                                                                                                         >  1:1893572/1‑271 (MQ=255)
                                                                       aTCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGc                                                                                                                                                                                                     >  1:323412/1‑289 (MQ=255)
                                                                            tACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGt                                                                                                                                                                                                >  1:390279/1‑289 (MQ=255)
                                                                                      gcagtggATTGTCAGGGTGATCACCATCCCGTCAGGCAGATATGGCAGGAAAGAGAAAATGGAACACAAGTCAAACCCTTACATTATTTGCCCCCCTTGTTGCCAGGCAGGCGAACTTTACGTTCAACAAGCGTCATAACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCAcc                                                                                                                                                                                        <  2:1238477/282‑1 (MQ=255)
                                                                                       aCGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCa                                                                                                                                                                                       <  1:1489481/288‑1 (MQ=255)
                                                                                       aCGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCa                                                                                                                                                                                       <  1:425918/288‑1 (MQ=255)
                                                                                       aCGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATACACCAGACCTATAGTCGCGGCGATGGCGGAGTTGTTCACCAg                                                                                                                                                                                      >  1:274191/1‑289 (MQ=255)
                                                                                           ttatttcacgggTGGTAACCGGCCCGTCGAGCAGATATGGCAGTGAAGGGACAATGGAACACCAGTCAAACTCGTACATTAGTGGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCTTTAATCAACACATA‑CGCCAGGGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGtt                                                                                                                                                                                   <  2:488638/279‑1 (MQ=255)
                                                                                              ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                <  1:755774/288‑1 (MQ=255)
                                                                                              ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                <  1:971550/288‑1 (MQ=255)
                                                                                              ttttCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                <  2:323412/288‑1 (MQ=255)
                                                                                                     ggTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAtctctg                                                                                                                                                                        >  2:1733172/1‑287 (MQ=255)
                                                                                                       tGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCa                                                                                                                                                                                          <  2:237580/269‑1 (MQ=255)
                                                                                                       tGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCa                                                                                                                                                                                          >  1:237580/1‑269 (MQ=255)
                                                                                                         aTCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACCCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGCGCAATTTACCCGCCTGCGCCGCCATATCCCCCACACCCCTAGTCTAGGCGAGGGCGGAGCTTTTCCCCAGGTTCatcatccctgtcg                                                                                                                                                                     >  2:60744/1‑281 (MQ=255)
                                                                                                               gacccGACGACCAGATATGGCAGGGAAGGGACCAGTGACCTCAAGTCAAACTCTAACATCATTCTCCACCCATGTGGCAAGGCAGTCGACCTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATGGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                              <  2:1311946/287‑1 (MQ=255)
                                                                                                                gCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTgc                                                                                                                                                                                                                                           >  1:1010099/1‑211 (MQ=255)
                                                                                                                 cccGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCg                                                                                                                                                                                                    <  2:1089565/249‑1 (MQ=255)
                                                                                                                  ccGTCGAGCAGCTATGGGAGGGAAGGGAAAATGGAACCCCAGTCAAATTCGTACCTTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTAATTTCAACCAGCGTCATAACCAAAATAATAAAAGCGTTAATCAAAACATA‑CGCCACCGTAATGGCGGTAAACGCCTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                              <  2:1452282/286‑1 (MQ=255)
                                                                                                                  ccGTCGAGAAATAATGGCAGGGAAGGGACAATGGAACTCCATTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATcgg                                                                                                                                                              <  2:1194302/286‑1 (MQ=255)
                                                                                                                    gTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCggg                                                                                                                                                          >  1:1052667/1‑288 (MQ=255)
                                                                                                                    gTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGa                                                                                                                                                         <  1:1583315/289‑1 (MQ=255)
                                                                                                                     tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCggggc                                                                                                                                                        >  2:163079/1‑287 (MQ=255)
                                                                                                                     tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGat                                                                                                                                                        >  1:1319677/1‑288 (MQ=255)
                                                                                                                     tCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAc                                                                                                                                                        >  1:100564/1‑289 (MQ=255)
                                                                                                                             atatGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcgc                                                                                                                                                >  1:355654/1‑289 (MQ=255)
                                                                                                                              tatGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAc                                                                                                                                                  <  1:1562214/286‑1 (MQ=255)
                                                                                                                              aatGGCAGGAAGGGGACAAGGGAACCCCAGTCAACCCCGTACATTAGTTCCCCCCCATGTTGCCGGGCAGGCGAACTTTACGTTCAACCGGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATC‑CGCCAGCGTAATGGCGGTAAACGCCGCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAAcg                                                                                                                                                 <  2:464605/286‑1 (MQ=255)
                                                                                                                                tGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGAt                                                                                                                                             <  2:390279/289‑1 (MQ=255)
                                                                                                                                       gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGCGGCGATGGCGGAGGTTTTCACCAGGTTCATCATCTCTGCGGTCATCGGCGGGGCGATAACGCCATAAGCCtt                                                                                                                                      >  1:946708/1‑289 (MQ=255)
                                                                                                                                       gaagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt                                                                                                                                      >  1:1843966/1‑289 (MQ=255)
                                                                                                                                        aagggaCAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTGGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATAACCAGCAGGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCAGCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCAtt                                                                                                                                      <  1:1543982/288‑1 (MQ=255)
                                                                                                                                             aagtaggAACTCCAGTCAAACTCGTAAATTATTTGCCCCCCCTTTTGCACGGCAGGCGAACTTTACGTTCAACCAGCGTAATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGTTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                                <  2:1538538/284‑1 (MQ=255)
                                                                                                                                              caaggcaaCTACAGTCAAACGCGTACATAATTTGCCCCCCGTGTGGCCAGGCGGGAGAACTTTACGTTAAACGGGGGTCATCACGAGCAGGATAAATGCGTTAACAAACACATC‑GGCCGGCGTAATGGCGGTAAACGACTCCCAGGCATGGGTTGAGTAATCGGGCAATGTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGgcag                                                                                                                                <  2:1266221/282‑1 (MQ=255)
                                                                                                                                                 tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGt                                                                                                                            >  1:489225/1‑289 (MQ=255)
                                                                                                                                                 tGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGt                                                                                                                            >  1:733562/1‑289 (MQ=255)
                                                                                                                                                      cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                >  2:244239/1‑232 (MQ=255)
                                                                                                                                                      cTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACCGTAAACCGATAAACATTAggaacaacgtacaa                                                                                                                       >  2:1234861/1‑277 (MQ=255)
                                                                                                                                                           gTCCAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCATCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCACATCCACCAAACCGATAGTCGCGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCACCGGCGGGACCAGAACCCGATAATCATTACGCCGCCGTActgatccat                                                                                                                  >  2:683708/1‑281 (MQ=255)
                                                                                                                                                           gTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                  >  1:278661/1‑289 (MQ=255)
                                                                                                                                                             cAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATaa                                                                                                                <  1:1262713/289‑1 (MQ=255)
                                                                                                                                                             cAAACTCGTACATTATTTGCCCCCCATGTTGCAAGGCAGGCAAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAt                                                                                                                  <  1:1603778/287‑1 (MQ=255)
                                                                                                                                                               aaCTCTTACATTATTTGCCCCCGATGTTGCCAGGCAGGCTAACTTTACGTTCAACCAGCGTCCTCACCAGCATAATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGAGTCCCAGGCATGGGCTGAGTAATCGCGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGc                                                                                                              <  2:946708/289‑1 (MQ=255)
                                                                                                                                                                          tattTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGAGAAACCTGCGGTcgcg                                                                                                   >  2:822382/1‑289 (MQ=255)
                                                                                                                                                                           attTCCCCCCCATGGTGCCAGGCACGCAAACTATCCGTTAACCCAGCGTCATCACCAGACTGAAAAAAGAGTAACTCAACACATA‑CGCCAGCTTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTa                                                                                                      <  2:1162671/285‑1 (MQ=255)
                                                                                                                                                                             ttGCCCCCCAGGTTGCCGGGCAGGCGAACTTTCCGTTAAACCAGCGTCAACACAAGCATAAAAAAACCGTTAATCAACCAATA‑CGCCAGCGTAATGGCGGTAAACGACCCCCGGCAATGGGCTGAGTAATCGGGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCa                                                                                                <  2:1583075/289‑1 (MQ=255)
                                                                                                                                                                                    ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGCTAAGCATTAGGCAGCAGTACTTATCGATAAGCCTGCGGGAGCGTCCGGCCCa                                                                                          >  2:591434/1‑288 (MQ=255)
                                                                                                                                                                                    ccATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTc                                                                                                 <  1:252165/281‑1 (MQ=255)
                                                                                                                                                                                      aTGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATc                                                                                        >  1:722463/1‑288 (MQ=255)
                                                                                                                                                                                               ggcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTAACGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGcgcg                                                                               >  1:1863437/1‑288 (MQ=255)
                                                                                                                                                                                                gcaggcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGACCGCGCgg                                                                              >  1:1562387/1‑288 (MQ=255)
                                                                                                                                                                                                    gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CAttt                                                                        >  1:417064/1‑289 (MQ=255)
                                                                                                                                                                                                    gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CAttt                                                                        >  2:904423/1‑289 (MQ=255)
                                                                                                                                                                                                    gcGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGGACCGACAAGCCTGCGGGAGCGTCAAGCCCAACCGCAACGCGG‑CAttt                                                                        >  2:638047/1‑289 (MQ=255)
                                                                                                                                                                                                         cTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATATTCGAGGCGATGGCGGAGTTTTTCACCAGGGTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGGACGTAACGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCCG‑CAttgtgtt                                                                    >  1:699418/1‑283 (MQ=255)
                                                                                                                                                                                                              cGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGAGGTAGCGTCAgg                                                                                              >  1:608695/1‑258 (MQ=255)
                                                                                                                                                                                                                   aaCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGTGGTCATCGGCGGGACGATAACGCGATAAGCATTTGGCATCAGTACGTAACGACAAGCCTGCGGTAGCGTCAGGCCCATCTCCAGCGCGG‑CATTTTTTTGCCCTcgcgtg                                                         >  2:791808/1‑287 (MQ=255)
                                                                                                                                                                                                                   aaCCAGCGTAATACCCGGAAATATAAAAGCGTTAA‑CAAAACATACCGCCAGCGTAATGGCGGTAACCGACCCCCAGGCAGGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGc                                                         <  2:133603/289‑1 (MQ=255)
                                                                                                                                                                                                                    aCCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCa                                                        >  1:1740409/1‑289 (MQ=255)
                                                                                                                                                                                                                     cgaacGTCATCACCCGCATGACAACAGCGTTAAAACACCCAGA‑CCACAGAGAAATGGCGGTAAACGACGCCCAGACATGGGCTGAGTAATCGGGCAATCTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGAGGGCGGAGTTTTGCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAg                                                       <  2:222557/285‑1 (MQ=255)
                                                                                                                                                                                                                             atcaCCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CCTTTTTTTGCCCTCGCGGCAgcgactgaa                                               >  1:1249206/1‑281 (MQ=255)
                                                                                                                                                                                                                                acaaGCATGATAAAAGCGTTACTAAACACATA‑AGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCGGAGTAATCGAGCAATTTACCCGCCTGAGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATcg                                            <  2:355654/286‑1 (MQ=255)
                                                                                                                                                                                                                                   aGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCCGCCAGCCCATCCCCAGCCGGG‑CATTTTTTTGCCCCCCCGGCAGCGACGGAATCgcgg                                         >  2:212196/1‑289 (MQ=255)
                                                                                                                                                                                                                                    gCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGCGGTCAGCGGCGGGACGATAACGCGATAAACATTAAGCAGCAATAAGCATGGCAAAACCTGCGGTAGCGGCAGGCCCCGTCCCAGCGCGG‑CACTTATGTGGCCTCGCGGCAGCTACCGAATcgccgc                                        >  2:496882/1‑289 (MQ=255)
                                                                                                                                                                                                                                     cATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTTCCCTCGCGGCAGCGACTGAATCgcggcg                                       >  1:88334/1‑289 (MQ=255)
                                                                                                                                                                                                                                         aTAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGt                                    >  1:1599246/1‑288 (MQ=255)
                                                                                                                                                                                                                                         aTAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGAAGATAACGCGATAAGCATTAGGCCGCAGTACGTAACGATAAGCCTGCGGTAGCGGCAGGCCCATTGCCAGCGAGG‑CCTTTTTTTGCCCTCCGGGCCGCGACTGAATCGCCGCGCGt                                    >  2:52850/1‑288 (MQ=255)
                                                                                                                                                                                                                                                  ttAATCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTGGc                          >  1:1708210/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    aaTCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                <  1:833663/138‑1 (MQ=255)
                                                                                                                                                                                                                                                    aaTCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTtcat                                                                                                                                                                                >  2:833663/1‑138 (MQ=255)
                                                                                                                                                                                                                                                    aaTCAACACATA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCaa                        >  1:1536222/1‑289 (MQ=255)
                                                                                                                                                                                                                                                          cacaTA‑CGCCAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACgg                  >  1:1459760/1‑289 (MQ=255)
                                                                                                                                                                                                                                                           acaAA‑CGCCAGCGTAGTGGCGGTAAACGACCCCCAGGAATGGGCTGGTTAACCAGGCAATTACCCCGCCTGGCCCGCCATAGCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACggg                 <  2:88334/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                 cGCCAGCGTAATGCGGGTAAAGGACTCCCCGGCAGGGGCTGAGTACTCGGGCAATTGACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGgcggcg            <  2:1773945/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   ccAGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCCGCGCGG‑CCTTTTTTTGCCCTCTCGCCAGCGACTCAATCGCAGCGCGTCCCTGTTCCGAAACACCGGCGGCGGt          >  2:1486587/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     aGCGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCCATAAACAGTAGGCAGCAGTACGTATCGATAATCCTGCGGTAACGGCAAGCCCCACTCCCGCCTGGACATTTTTTGCCCCACGC‑GCACACACGAAATCGCGCCGCGTTCCCGTTCCCACAAACCggcgtcagca         >  2:1111968/1‑282 (MQ=255)
                                                                                                                                                                                                                                                                       gggaaTGGCGGTAAACGACTCCCGGGCATGGGCTGGGTAATCGGGGAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGGGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGTGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  1:1095988/285‑1 (MQ=255)
                                                                                                                                                                                                                                                                       cGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  1:500003/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                       cGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAAc      >  1:931570/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                       cGTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAAc      >  1:1146689/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                        gTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGTGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  1:1488364/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                        gTAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTaaa       <  1:1642639/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                         tAATGGCGGTAAACGACTCCCAGGCATGGGCTGAGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTCGAGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCTGAGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGCGACTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACa     >  1:805957/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                      |||                                                                                                                                                                                                                                                                                    
TGGCAAACCACGCCACGGGCGCAAAGCTGGATAAACGCATCACCGCCAGCATCGTGCCCCACAAAATACCAATCACTACCGCC‑GTGACGGTGATTTTCAGGGTGATCACCAGCCCGTCGAGCAGATATGGCAGGGAAGGGACAATGGAACTCCAGTCAAACTCGTACATTATTTGCCCCCCATGTTGCCAGGCAGGCGAACTTTACGTTCAACCAGCGTCATCACCAGCATGATAAAAGCGTTAATCAACACATA‑CGCCAGCGTAATGGCGGTAAAGCTCTCCCAGGCATGGGCACTGTAATCGAGCAATTTACCCGCCTGCGCCGCCATATCCACCAGACCGATAGTGCTGGCGATGGCGGAGTTTTTCACCAGGTTCATCATCTCACTGGTCATCGGCGGGACGATAACGCGATAAGCATTAGGCAGCAGTACGTATCGATAAGCCTGCGGTAGCGTCAGGCCCATCGCCAGCGCGG‑CATTTTTTTGCCCTCGCGGCAGGCTCTGAATCGCGGCGCGTACCTGTTCGCAAACACGGGCGGCGGTAAACAGCC  >  CP042583/559378‑559931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A